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Report for CCDS26017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26017.1 Public Mus musculus 12 Smoc1 23 108 98 CCDS HistoryNCBI Gene:64075Re-query CCDS DB by CCDS ID:26017.1Re-query CCDS DB by GeneID:64075See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021564.10 ENSMUSP00000021564.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021564.10Link to Ensembl Protein Viewer:ENSMUSP00000021564.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000021564Re-query CCDS DB by Protein ID:ENSMUSP00000021564
Original member Current member NCBI NM_022316.2 NP_071711.2 Accepted alive Link to Nucleotide Sequence:NM_022316.2Link to Protein Sequence:NP_071711.2Re-query CCDS DB by Nucleotide ID:NM_022316Re-query CCDS DB by Protein ID:NP_071711Link to BLAST:NP_071711.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071711.2 452 Q8BLY1-2 452 99.7788% 0 1

Chromosomal Locations for CCDS 26017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 81027063 81027158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81104607 81104772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81105899 81106011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81135776 81135875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81137965 81138012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81150652 81150708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81152673 81152753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81167507 81167699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81168229 81168311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81170186 81170291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81179479 81179723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81183988 81184041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 81184549 81184565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGCTGCCCGCGCGCGTCCGTCTGCTCACGCCCCACTTGCTGCTCGTGTTGGTGCAGCTGTCCCCGGCCG
GCGGCCACCGCACCACCGGCCCCAGGTTCCTAATAAGTGACCGTGACCCTCCGTGCAACCCACACTGTCC
CAGGACTCAGCCCAAGCCCATCTGCGCCTCTGACGGCAGGTCCTACGAGTCCATGTGTGAGTACCAGAGA
GCCAAGTGCCGAGACCCAGCCCTGGCCGTGGTCCATCGAGGTCGATGCAAAGATGCTGGCCAGAGCAAGT
GTCGCCTGGAGAGGGCTCAGGCCTTGGAACAGGCCAAGAAGCCTCAGGAGGCTGTGTTTGTCCCAGAGTG
TGGCGAGGATGGTTCCTTCACACAGGTGCAGTGCCATACGTACACAGGGTACTGCTGGTGTGTCACCCCA
GATGGCAAGCCCATCAGTGGTTCTTCCGTGCAGAATAAAACTCCTGTATGTTCAGGTCCAGTTACCGACA
AGCCCTTGAGCCAGGGTAATTCAGGAAGAAAAGATGATGGCTCTAAACCCACGCCCACGATGGAGACCCA
ACCTGTGTTCGATGGAGATGAAATCACAGCCCCCACCTTATGGATTAAGCACTTGGTAATCAAAGACTCC
AAGTTGAATAACACCAACGTAAGAAATTCAGAGAAAGTCCATTCCTGTGACCAGGAAAGACAGAGTGCCC
TGGAAGAGGCGCGGCAGAATCCCCGAGAGGGCATTGTGATCCCCGAGTGTGCTCCTGGTGGGCTCTATAA
GCCGGTGCAATGCCACCAATCCACAGGCTACTGTTGGTGCGTCCTAGTAGACACAGGGCGCCCATTGCCG
GGGACTTCCACACGCTATGTGATGCCAAGTTGCGAGAGTGACGCCAGAGCCAAGAGCATAGAGGCCGATG
ACCCTTTCAAGGACAGGGAGTTGCCAGGTTGTCCTGAAGGGAAGAAGATGGAATTTATTACCAGCCTGCT
GGATGCCCTCACCACAGACATGGTTCAGGCCATTAACTCAGCAGCGCCCACTGGAGGTGGGAGGTTCTCA
GAGCCAGACCCCAGCCACACCCTGGAGGAGCGAGTGGCACACTGGTACTTCAGCCAGCTGGATAGCAACA
GCAGCGATGACATTAACAAGCGGGAGATGAAGCCGTTCAAGCGCTATGTAAAGAAGAAAGCCAAGCCCAA
GAAATGTGCCCGGCGCTTCACCGACTACTGCGACCTGAACAAGGATAAGGTCATCTCACTGCCTGAGCTG
AAGGGCTGCCTGGGTGTTAGCAAAGAAGGTGGTAGCCTTGGCAGCTTCCCTCAGGGAAAACGAGCAGGCA
CAAACCCGTTCATCGGACGCCTTGTCTAA

Translation (452 aa):
MLPARVRLLTPHLLLVLVQLSPAGGHRTTGPRFLISDRDPPCNPHCPRTQPKPICASDGRSYESMCEYQR
AKCRDPALAVVHRGRCKDAGQSKCRLERAQALEQAKKPQEAVFVPECGEDGSFTQVQCHTYTGYCWCVTP
DGKPISGSSVQNKTPVCSGPVTDKPLSQGNSGRKDDGSKPTPTMETQPVFDGDEITAPTLWIKHLVIKDS
KLNNTNVRNSEKVHSCDQERQSALEEARQNPREGIVIPECAPGGLYKPVQCHQSTGYCWCVLVDTGRPLP
GTSTRYVMPSCESDARAKSIEADDPFKDRELPGCPEGKKMEFITSLLDALTTDMVQAINSAAPTGGGRFS
EPDPSHTLEERVAHWYFSQLDSNSSDDINKREMKPFKRYVKKKAKPKKCARRFTDYCDLNKDKVISLPEL
KGCLGVSKEGGSLGSFPQGKRAGTNPFIGRLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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