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Report for CCDS35553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35553.1 Public Mus musculus 1 Ercc5 23 108 98 CCDS HistoryNCBI Gene:22592Re-query CCDS DB by CCDS ID:35553.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027214.3 ENSMUSP00000027214.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027214.3Link to Ensembl Protein Viewer:ENSMUSP00000027214.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027214Re-query CCDS DB by Protein ID:ENSMUSP00000027214
Original member NCBI NM_011729.2 NP_035859.2 Updated not alive Link to Nucleotide Sequence:NM_011729.2Link to Protein Sequence:NP_035859.2Re-query CCDS DB by Nucleotide ID:NM_011729Re-query CCDS DB by Protein ID:NP_035859
Current member NCBI NM_011729.3 NP_035859.2 Accepted alive Link to Nucleotide Sequence:NM_011729.3Link to Protein Sequence:NP_035859.2Re-query CCDS DB by Nucleotide ID:NM_011729Re-query CCDS DB by Protein ID:NP_035859Link to BLAST:NP_035859.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035859.2 1170 P35689 1170 99.8291% 0 2

Chromosomal Locations for CCDS 35553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44148063 44148150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44156937 44157112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44158144 44158259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44158805 44158891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44160977 44161037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44161810 44161953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44163877 44164084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44166809 44167882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44173338 44173579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44173912 44174031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44174162 44174375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44175839 44175983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44178174 44178374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44179147 44179231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44180531 44181082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3513 nt):
ATGGGAGTGCAGGGGCTGTGGAAGCTGCTGGAGTGCTCGGGCCACCGGGTCAGCCCGGAGGCGCTGGAGG
GCAAGGTGCTGGCCGTGGATATTAGCATTTGGCTAAACCAAGCACTTAAAGGAGTCCGAGATAGCCATGG
GAATGTGATAGAAAATGCTCATCTTCTCACATTATTCCACCGGCTCTGCAAACTCTTGTTTTTTCGTATC
CGCCCTATTTTTGTATTTGATGGTGATGCTCCGCTGCTAAAGAAACAGACCTTGGCAAAGAGAAGGCAGA
GGAAGGATTCTGCATCCATTGACTCGAGAAAAACCACCGAGAAACTTCTGAAAACCTTTCTGAAGAGACA
GGCTCTGAAAACTGCTTTCAGAAGCTCAAGACATGAAGCGCCACCCAGTCTCACTCAGGTTCAAAGACAG
GATGACATCTATGTTTTGCCACCTTTACCAGAGGAAGAAAAACACAGTTCAGAAGAGGAAGATGAAAAGC
AATGGCAAGCAAGAATGGATCAAAAACAAGCATTGCAGGAAGAATTCTTTCATAATCCTCAGGCCATAGA
TATCGAGTCTGAGGACTTCAGCAGCCTGCCTCCTGAAGTAAAGCATGAGATCTTGACTGACATGAAAGAG
TTTACCAAGCGAAGGCGAACACTGTTTGAAGCAATGCCAGAGGAGTCTAATGACTTTTCACAGTACCAGC
TGAAAGGCTTGCTGAAGAAGAACTACCTAAACCAGCACATAGAAAATGTCCAAAAGGAAATGAACCAGCA
GCATTCAGGGCAAATCCAGAGGCAATATCAAGATGAGGGAGGCTTTCTGAAGGAAGTGGAGTCCAGGAGA
GTGGTCTCTGAAGACACCTCACATTACATCTTGATAAAAGGTATTCAAGGTAAGAAAGTCATGGATGTGG
ATTCAGAATCTCTTCCTTCCTCCAGCAACGTACACAGTGTGTCTTCCAACCTGAAGTCATCACCCCACGA
GAAAGTGAAGCCGGAGAGAGAGCCAGAGGCCGCGCCTCCTTCTCCAAGAACTCTACTGGCTATTCAGGCA
GCCATGCTGGGAAGTAGCTCAGAAGATGAGCCAGAGAGTAGAGAGGGAAGGCAGTCTAAGGAGAGGAACT
CAGGGGCCACTGCAGATGCAGGTTCCATCTCACCCCGGACCTGTGCAGCTATTCAGAAAGCTCTGGATGA
TGATAACGATGAGAAAGTGTCTGGCAGCAGTGATGATCTAGCAGAGAAAATGCTGCTTGGAAGTGGGCTG
GAGCAGGAGGAGCATGCTGATGAAACGGCAGAAAGAGGTGGAGGCGTGCCATTTGACACAGCGCCTCTCA
CACCCAGTGTGACTGAGGTAAAGGAGTGTGTAACCAGTGGCAGCAGTGCAAACGGACAGACAGACTCAGC
TCATTCATTTACAACCGCGAGTCACCGATGTGATACTCCAAAAGAAACAGTGTCTCTTGCTCGTGCCGTG
AAAGAAGCATCTCAGATAAGCAGTGAATGTGAGGTGGAGGGTAGGCCAGCTGCCCTCTCACCAGCATTCA
TAGGAACTCCAAGCAGTCATGTCTCTGGAGTCCTCAGTGAAAGGGAACCCACCCTGGCACCTCCGACGAC
AAGAACACATTCTGATCAGGGGATAGACATACACCCTGAAGATCCTGAGCTACAAAACGGACTCTACCCA
CTTGAGACCAAGTGTAATTCCTCTCGCCTTTCAAGTGACGATGAAACAGAAGGTGGGCAAAACCCTGCTC
CCAAAGCATGTAGTACAGTTCATGTCCCTGCAGAGGCAATGAGTAACTTAGAAAATGCGTTGCCTTCTAA
TGCTGAAGAACGTGGAGATTTCCAGGAAACCATCCAGCTACGGGAGGTGCCTGAGGCTGCTGCCAGGGAG
CTGATTTCAGCTCCAAAGCCCATGGGACCAATGGAGATGGAGTCTGAAGAAAGCGAGTCTGATGGAAGTT
TCATTGAGGTGCAGAGTGTGGTCAGCAATAGTGAACTTCAAACAGAGTCATCCGAGGCTTCTACACATCT
CTCTGAAAAAGATGCAGAGGAACCAAGAGAAACTCTGGAGGAAGGAACCTCCAGGGACACAGAGTGCCTC
CTACAGGACAGCTCTGACATTGAGGCAATGGAAGGACACAGAGAAGCTGACATAGATGCTGAGGACATGC
CCAACGAATGGCAAGATATTAATTTGGAGGAACTGGATGCCCTGGAAAGTAACCTCTTAGCAGAACAGAA
TTCACTGAAAGCGCAAAAACAGCAGCAAGATCGGATTGCTGCCTCTGTAACAGGCCAGATGTTTCTGGAA
AGCCAGGAACTCCTGCGCCTGTTTGGCGTTCCCTACATCCAGGCTCCCATGGAGGCAGAGGCACAGTGTG
CCATGTTGGACCTCACTGACCAGACTTCTGGAACGATTACTGACGATAGTGATATCTGGCTGTTTGGGGC
CCGGCATGTCTATAAGAATTTTTTTAACAAAAACAAGTTTGTAGAGTACTATCAATATGTGGACTTTTAC
AGTCAACTAGGACTGGACCGTAACAAGCTAATCAACTTGGCCTATCTACTGGGCAGTGACTATACGGAAG
GGATACCAACTGTAGGCTGTGTAACAGCCATGGAGATTCTCAATGAATTCCCTGGACGAGGCCTGGACCC
ACTCCTAAAATTCTCAGAGTGGTGGCACGAAGCTCAAAATAACAAGAAGGTTGCAGAAAATCCCTATGAC
ACCAAAGTGAAAAAAAAATTACGGAAGTTGCAGCTGACACCTGGTTTCCCCAACCCGGCAGTTGCAGATG
CTTACCTCAGGCCTGTGGTGGATGACTCCAGGGGATCGTTCCTGTGGGGCAAGCCTGATGTGGACAAGAT
TAGAGAATTTTGTCAGAGGTATTTTGGCTGGAACAGGATGAAGACCGATGAATCCCTGTATCCAGTACTA
AAGCACCTGAATGCCCATCAGACCCAGCTCCGGATTGATTCCTTTTTTAGACTAGCTCAGCAGGAAAAAC
AAGATGCCAAACTCATAAAGAGTCATAGGCTAAACAGAGCAGTGACATGTATACTGAGGAAAGAACGGGA
AGAGAAAGCTCCTGAGCTGACAAAAGTGACTGAGGCCCTGGATGATGCAAAAGGAAAAACCCAGAAAAGA
GAGCTACCATATAAAAAAGAGACTTCAGTTCCAAAAAGAAGGAGACCTTCAGGCAATGGTGGGTTTCTAG
GGGACCCCTACTGCTCAGAATCACCCCAGGAATCTTCCTGTGAGGATGGAGAAGGTTCATCTGTGATGAG
TGCACGACAGAGAAGTGCAGCTGAGTCGTCAAAAATCAGCTGCTCAGATGTGCCTGACTTAGTGAGAGAC
CCTCCTCATGGGAGGCAAGGCTGTGTGTCCACTAGTAGCTCCAGCGAGGATGATGAGGACAAAGCCAAGA
CTGTCCTAGTGACTGCTAGACCTGTATTTGGGAAGAAAAAACTGAAACTAAAGAGTATGAAGAGAAGGAA
AAAGAAAACCTAA

Translation (1170 aa):
MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRI
RPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSRHEAPPSLTQVQRQ
DDIYVLPPLPEEEKHSSEEEDEKQWQARMDQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDMKE
FTKRRRTLFEAMPEESNDFSQYQLKGLLKKNYLNQHIENVQKEMNQQHSGQIQRQYQDEGGFLKEVESRR
VVSEDTSHYILIKGIQGKKVMDVDSESLPSSSNVHSVSSNLKSSPHEKVKPEREPEAAPPSPRTLLAIQA
AMLGSSSEDEPESREGRQSKERNSGATADAGSISPRTCAAIQKALDDDNDEKVSGSSDDLAEKMLLGSGL
EQEEHADETAERGGGVPFDTAPLTPSVTEVKECVTSGSSANGQTDSAHSFTTASHRCDTPKETVSLARAV
KEASQISSECEVEGRPAALSPAFIGTPSSHVSGVLSEREPTLAPPTTRTHSDQGIDIHPEDPELQNGLYP
LETKCNSSRLSSDDETEGGQNPAPKACSTVHVPAEAMSNLENALPSNAEERGDFQETIQLREVPEAAARE
LISAPKPMGPMEMESEESESDGSFIEVQSVVSNSELQTESSEASTHLSEKDAEEPRETLEEGTSRDTECL
LQDSSDIEAMEGHREADIDAEDMPNEWQDINLEELDALESNLLAEQNSLKAQKQQQDRIAASVTGQMFLE
SQELLRLFGVPYIQAPMEAEAQCAMLDLTDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFY
SQLGLDRNKLINLAYLLGSDYTEGIPTVGCVTAMEILNEFPGRGLDPLLKFSEWWHEAQNNKKVAENPYD
TKVKKKLRKLQLTPGFPNPAVADAYLRPVVDDSRGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVL
KHLNAHQTQLRIDSFFRLAQQEKQDAKLIKSHRLNRAVTCILRKEREEKAPELTKVTEALDDAKGKTQKR
ELPYKKETSVPKRRRPSGNGGFLGDPYCSESPQESSCEDGEGSSVMSARQRSAAESSKISCSDVPDLVRD
PPHGRQGCVSTSSSSEDDEDKAKTVLVTARPVFGKKKLKLKSMKRRKKKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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