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Report for CCDS29528.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29528.1 Public Mus musculus 19 Plaat3 23 108 98 CCDS HistoryNCBI Gene:225845Re-query CCDS DB by CCDS ID:29528.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29528.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025925.10 ENSMUSP00000025925.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025925.10Link to Ensembl Protein Viewer:ENSMUSP00000025925.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025925Re-query CCDS DB by Protein ID:ENSMUSP00000025925
Original member Current member EBI ENSMUST00000136756.1 ENSMUSP00000115151.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136756.1Link to Ensembl Protein Viewer:ENSMUSP00000115151.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136756Re-query CCDS DB by Protein ID:ENSMUSP00000115151
Original member Current member NCBI NM_001362425.1 NP_001349354.1 Accepted alive Link to Nucleotide Sequence:NM_001362425.1Link to Protein Sequence:NP_001349354.1Re-query CCDS DB by Nucleotide ID:NM_001362425Re-query CCDS DB by Protein ID:NP_001349354Link to BLAST:NP_001349354.1
Original member Current member NCBI NM_139269.2 NP_644675.2 Accepted alive Link to Nucleotide Sequence:NM_139269.2Link to Protein Sequence:NP_644675.2Re-query CCDS DB by Nucleotide ID:NM_139269Re-query CCDS DB by Protein ID:NP_644675Link to BLAST:NP_644675.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349354.1 162 Q8R3U1-1 162 100% 0 0
NP_644675.2 162 Q8R3U1-1 162 100% 0 0

Chromosomal Locations for CCDS 29528.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7557981 7557995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7574937 7575039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7578954 7579222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7585565 7585666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGCTAGCACCCATACCAGAACCCAAGCCTGGAGACCTGATTGAGATTTTCCGCCCTATGTACAGACACT
GGGCCATCTATGTTGGTGATGGATACGTGATCCACCTGGCTCCTCCAAGTGAAATCGCAGGAGCTGGGGC
AGCCAGCATCATGTCTGCTTTGACTGACAAGGCCATAGTGAAGAAAGAACTGCTGTGCCATGTGGCCGGG
AAGGACAAGTACCAGGTCAATAACAAACATGACGAGGAGTACACCCCACTGCCTCTGAGCAAGATCATCC
AGCGGGCTGAGAGACTGGTGGGGCAGGAGGTGCTCTACAGGCTGACCAGCGAGAACTGTGAGCACTTTGT
GAATGAACTACGCTATGGAGTTCCTCGGAGTGATCAGGTCAGAGATGCGGTCAAGGCGGTAGGCATCGCT
GGAGTGGGCTTGGCGGCCTTGGGCCTCGTTGGAGTCATGCTCTCCAGAAACAAGAAACAGAAGCAATGA

Translation (162 aa):
MLAPIPEPKPGDLIEIFRPMYRHWAIYVGDGYVIHLAPPSEIAGAGAASIMSALTDKAIVKKELLCHVAG
KDKYQVNNKHDEEYTPLPLSKIIQRAERLVGQEVLYRLTSENCEHFVNELRYGVPRSDQVRDAVKAVGIA
GVGLAALGLVGVMLSRNKKQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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