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Report for CCDS37856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37856.1 Public Mus musculus 18 Mapk4 23 108 98 CCDS HistoryNCBI Gene:225724Re-query CCDS DB by CCDS ID:37856.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091851.9 ENSMUSP00000089462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091851.9Link to Ensembl Protein Viewer:ENSMUSP00000089462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091851Re-query CCDS DB by Protein ID:ENSMUSP00000089462
Original member Current member NCBI NM_172632.2 NP_766220.2 Accepted alive Link to Nucleotide Sequence:NM_172632.2Link to Protein Sequence:NP_766220.2Re-query CCDS DB by Nucleotide ID:NM_172632Re-query CCDS DB by Protein ID:NP_766220Link to BLAST:NP_766220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766220.2 583 Q6P5G0 583 100% 0 0

Chromosomal Locations for CCDS 37856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73930398 73931094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73933897 73934098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73935006 73935167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73937130 73937274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73969891 73970436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCTGAGAAAGGTGACTGCATCGCCAGCGTCTACGGGTATGACCTTGGTGGGCGCTTCATTGACTTCC
AACCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGTCAGCTACGGACAGCAGGGCTTGCCGGAAGGTGGC
CGTGAAGAAGATCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGG
CGCCTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCAGGGCG
AGCTCTTCAAGTTTAGCGTGGCCTATATCGTCCAAGAGTACATGGAGACTGACCTGGCGTGCCTGCTGGA
GCAGGGCACGCTGACTGAGGACCACGCCAAGCTGTTCATGTATCAGCTGCTCCGTGGGCTCAAGTACATC
CACTCTGCGAACGTGCTGCACAGAGACCTGAAGCCCGCCAACATCTTCATCAGCACGGAGGACCTTGTGC
TCAAGATTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAACATTACTCACACAAGGGTTATCTGTCAGA
AGGGTTGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATC
GATATGTGGGCAGCTGGCTGCATCCTGGCAGAGATGCTCACGGGGAAAATGCTCTTCGCTGGGGCTCACG
AGCTGGAGCAGATGCAGCTCATCCTAGACACCATCCCTGTGGTCCGGGAGGAAGACAAGGAGGAGCTGCT
CAGGGTGATGCCGTCCTTCGTCAGCAGCACCTGGGAGGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGAC
GTCAACAGTGAAGCCATTGACTTTCTGGAGAAGATCCTGACCTTTAACCCCATGGACCGCTTAACAGCTG
AGATGGGGCTTCAGCATCCTTACATGAGCCCGTACTCGTGCCCCGAGGATGAGCCCACCTCACAACACCC
TTTCCGCATTGAGGACGAGATCGACGACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCTCCAACTGG
GACAGGTATCCTGTGAGCCTGTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGG
TGCAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTC
ACAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCGACTAT
GGACGGTCCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGCTACTGTGGCGCGACAACAAGC
CCCACCACTACTCGGAACCCAAGCTCATCCTGGACCTGTCGCACTGGAAGCAGGCGGCCAGCGCTCCCCC
CAGGGCTGCAGTAGCAGCAGACCCTGTGTCACGTGAGGATGAGCCAGCAAGCCTCTTTCTGGAGATTGCA
CAGTGGGTCAAGAGCACACAAAGTGGCTCTGAGCGTGCCAGTCCTCCCCCTGATGCCCCAGAGCCCCGTC
TCTCTGCCTCACCCCCGGGACACCCAACACCCATCGATGGGGGTGCCAGTCCCCAGTTCGACTTAGACGT
GTTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTG
AATGGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCAAAGAAAGGTGGT
GA

Translation (583 aa):
MAEKGDCIASVYGYDLGGRFIDFQPLGFGVNGLVLSATDSRACRKVAVKKIVLSDARSMKHALREIKIIR
RLDHDNIVKVYEVLGPKGSDLQGELFKFSVAYIVQEYMETDLACLLEQGTLTEDHAKLFMYQLLRGLKYI
HSANVLHRDLKPANIFISTEDLVLKIGDFGLARIVDQHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAI
DMWAAGCILAEMLTGKMLFAGAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVKRPLRKLLPD
VNSEAIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEPTSQHPFRIEDEIDDIVLMAASQSQLSNW
DRYPVSLSSDLEWRPDRCQDASEVQRDPRAGSTPLAEDVQVDPRKDSQSSSERFLEQSHSSMERAFEADY
GRSCDYKVGSPSYLDKLLWRDNKPHHYSEPKLILDLSHWKQAASAPPRAAVAADPVSREDEPASLFLEIA
QWVKSTQSGSERASPPPDAPEPRLSASPPGHPTPIDGGASPQFDLDVFISRALKLCTKPEDLPENKLGDL
NGACISEHPGDLVQTEAFSKERW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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