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Report for CCDS28083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28083.1 Public Mus musculus 16 Lpp 23 108 98 CCDS HistoryNCBI Gene:210126Re-query CCDS DB by CCDS ID:28083.1Re-query CCDS DB by GeneID:210126See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28083.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038053.13 ENSMUSP00000036304.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038053.13Link to Ensembl Protein Viewer:ENSMUSP00000036304.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038053Re-query CCDS DB by Protein ID:ENSMUSP00000036304
Original member Current member EBI ENSMUST00000078988.9 ENSMUSP00000078005.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078988.9Link to Ensembl Protein Viewer:ENSMUSP00000078005.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078988Re-query CCDS DB by Protein ID:ENSMUSP00000078005
Original member Current member NCBI NM_001145952.1 NP_001139424.1 Accepted alive Link to Nucleotide Sequence:NM_001145952.1Link to Protein Sequence:NP_001139424.1Re-query CCDS DB by Nucleotide ID:NM_001145952Re-query CCDS DB by Protein ID:NP_001139424Link to BLAST:NP_001139424.1
Original member Current member NCBI NM_178665.5 NP_848780.3 Accepted alive Link to Nucleotide Sequence:NM_178665.5Link to Protein Sequence:NP_848780.3Re-query CCDS DB by Nucleotide ID:NM_178665Re-query CCDS DB by Protein ID:NP_848780Link to BLAST:NP_848780.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139424.1 613 Q8BFW7-1 613 100% 0 0
NP_848780.3 613 Q8BFW7-1 613 100% 0 0

Chromosomal Locations for CCDS 28083.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 24608125 24608317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24661677 24661789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24681746 24681871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24761593 24762276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24845091 24845217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24889790 24889959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24971831 24972009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24977200 24977320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 24979193 24979321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGTCTCACCCATCTTGGCTGCCACCCAAAAGCACTGGTGAGCCTCTTGGCCACGTGCCTGCACGGATGG
AGACCACCCATTCTTTTGGGAACCCCAGTATCTCAGTGTCAACACAACAGCCACCCAAGAAGTATGCTCC
AGTTGTTGCTCCGAAACCCAAGTATAACCCATACAAGCAGCCTGGAGGAGAGGGTGATCTTCTCCCACCG
CCACCACCACCTCTAGAGGATCCTGGTACCATCCCACCTGGTCCCGGACACTTCCCTCCTCCTCCACCAC
TGGATGAAGGGGCTTTCAAAGTGCAGCAGGGAAATCCTGGAGGCAAGACCCTGGAGGAAAGGCGCTCTAG
TCTAGATGCAGAGATCGACTCCTTGACCAGCATCTTGGCTGATTTGGAGTGCAGCTCACCCTACAAGCCA
CGTCCCCCACAGGGCTCTGCTAGTTCAATAGCCTCTCCTCCAGTTTCTACTCCTGTCACAGGACATAAGA
GAATGGTCATTCCACAGCAGCCACCCCTGACAGCAACCAAGAAGTCCGCAACAAAACCACAGCCTGCACC
CCAGGCTGCACCCATCCCAGTGACTCCAATTGGAACACTCAAACCCCAGCCTCAGCCAGTTCCAGCCTCC
TATACTACGGCATCCACATCTTCAAGGCCCACCTTTAATGTGCAAGTGAAGTCAGCTCAGCCCAGCCCAC
ATTACATGGCTGGTCCATCCTCTGGACAAATATATGGTCCAGGGCCTCGTGGCTATAACAACCAGCCAGT
TCCTGTATCGGGACAGTGTCCTCCTCCTCCAACCTGTGTTGGTACCGACTATGCATATATTCCACCATCT
GGACATCCGCCTGAGTCTGGATATGGGTATACCTCCAACCAAGGACGCTATTATGAACCTTACTATGCAG
CAGGTCCTAGCTATGGGGGCCGAAGTGAAGGTGATACTGCTTATGGGCAACAGGTTCAACCTAATACCTG
GAAGCGGGAAGCTGCGTATGCCCCTCCTGCAAGCGGGAATCAGAACCATCCTGGCATGTATCCAGTCAGT
GGCCCCAAGAAGACCTATATCACAGACCCTGTTTCAGCGCCCTGTGCACCACCACTGCAGCCAAAGGGTG
GATACCCTGGGCCTATGGGGCCTCCTTCCATCCCCCCATCATTCCGCCCAGAAGATGAGCTCGAACACTT
GACCAAGAAGATGCTGTATGACATGGAGAACCCACCCGCTGACGATTACTTTGGCCGTTGTGCCCGCTGT
GGGGAAAATGTTGTTGGAGAAGGAACAGGATGTACTGCCATGGATCAGGTCTTCCACGTGGATTGCTTCA
CCTGCATTGTCTGTGATGTCAAGCTCCGAGGGCAGCCTTTCTATGCCGTGGAGAAGAAGGCATACTGCGA
GCCCTGCTACATTAATACCCTGGAGCAGTGCAGTGTGTGTTCGAAGCCCATCATGGAGCGGATCCTCCGT
GCCACCGGGAAGGCCTACCACCCCCACTGCTTCACCTGCGTGATGTGCCACCGTAGCCTGGACGGCATCC
CATTTACTGTGGATGCTTGCGGTCTCATTCACTGCATTGAGGACTTCCACAAGAAATTTGCCCCGCGCTG
TTCTGTGTGCAAGGAACCTATCATGCCAGCCCCAGGCCAGGAGGAGACTGTCCGCATTGTGGCTCTGGAC
CGTGATTTCCATGTGCACTGCTATCGCTGTGAGGACTGTGGTGGTCTTCTGTCCGAAGGAGACAACCAAG
GCTGCTACCCCTTGGATGGACACATTCTCTGTAAGACCTGCAACTCGGCTCGCATCAGGGTCTTGACGGC
CAAGGCAAGCACTGACCTGTAG

Translation (613 aa):
MSHPSWLPPKSTGEPLGHVPARMETTHSFGNPSISVSTQQPPKKYAPVVAPKPKYNPYKQPGGEGDLLPP
PPPPLEDPGTIPPGPGHFPPPPPLDEGAFKVQQGNPGGKTLEERRSSLDAEIDSLTSILADLECSSPYKP
RPPQGSASSIASPPVSTPVTGHKRMVIPQQPPLTATKKSATKPQPAPQAAPIPVTPIGTLKPQPQPVPAS
YTTASTSSRPTFNVQVKSAQPSPHYMAGPSSGQIYGPGPRGYNNQPVPVSGQCPPPPTCVGTDYAYIPPS
GHPPESGYGYTSNQGRYYEPYYAAGPSYGGRSEGDTAYGQQVQPNTWKREAAYAPPASGNQNHPGMYPVS
GPKKTYITDPVSAPCAPPLQPKGGYPGPMGPPSIPPSFRPEDELEHLTKKMLYDMENPPADDYFGRCARC
GENVVGEGTGCTAMDQVFHVDCFTCIVCDVKLRGQPFYAVEKKAYCEPCYINTLEQCSVCSKPIMERILR
ATGKAYHPHCFTCVMCHRSLDGIPFTVDACGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALD
RDFHVHCYRCEDCGGLLSEGDNQGCYPLDGHILCKTCNSARIRVLTAKASTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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