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Report for CCDS41731.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41731.1 Public Homo sapiens 11 TIRAP 24 110 108 CCDS HistoryNCBI Gene:114609Re-query CCDS DB by CCDS ID:41731.1Re-query CCDS DB by GeneID:114609See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41731.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392678.7 ENSP00000376445.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392678.7Link to Ensembl Protein Viewer:ENSP00000376445.3Re-query CCDS DB by Nucleotide ID:ENST00000392678Re-query CCDS DB by Protein ID:ENSP00000376445
Original member Current member EBI ENST00000700491.1 ENSP00000515019.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700491.1Link to Ensembl Protein Viewer:ENSP00000515019.1Re-query CCDS DB by Nucleotide ID:ENST00000700491Re-query CCDS DB by Protein ID:ENSP00000515019
Original member Current member EBI ENST00000700492.1 ENSP00000515021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700492.1Link to Ensembl Protein Viewer:ENSP00000515021.1Re-query CCDS DB by Nucleotide ID:ENST00000700492Re-query CCDS DB by Protein ID:ENSP00000515021
Original member Current member NCBI NM_001318776.2 NP_001305705.1 Accepted alive Link to Nucleotide Sequence:NM_001318776.2Link to Protein Sequence:NP_001305705.1Re-query CCDS DB by Nucleotide ID:NM_001318776Re-query CCDS DB by Protein ID:NP_001305705Link to BLAST:NP_001305705.1
Original member Current member NCBI NM_148910.3 NP_683708.1 Accepted alive Link to Nucleotide Sequence:NM_148910.3Link to Protein Sequence:NP_683708.1Re-query CCDS DB by Nucleotide ID:NM_148910Re-query CCDS DB by Protein ID:NP_683708Link to BLAST:NP_683708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305705.1 235 P58753-2 235 100% 0 0
NP_683708.1 235 P58753-2 235 100% 0 0

Chromosomal Locations for CCDS 41731.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126290895 126290961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126292477 126293117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGCATCATCGACCTCCCTCCCAGCTCCTGGCTCTCGGCCTAAGAAGCCTCTAGGCAAGATGGCTGACT
GGTTCAGGCAGACCCTGCTGAAGAAGCCCAAGAAGAGGCCCAACTCCCCAGAAAGCACCTCCAGCGATGC
TTCACAGCCTACCTCACAGGACAGCCCACTACCCCCAAGCCTCAGCTCAGTCACGTCTCCCAGCCTGCCA
CCCACACATGCGAGTGACAGTGGCAGTAGTCGCTGGAGCAAAGACTATGACGTCTGCGTGTGCCACAGTG
AGGAAGACCTGGTGGCCGCCCAGGACCTGGTCTCCTACTTGGAAGGCAGCACTGCCAGCCTGCGCTGCTT
CCTGCAACTCCGGGATGCAACCCCAGGCGGCGCTATAGTGTCCGAGCTGTGCCAGGCACTGAGCAGTAGT
CACTGCCGGGTGCTGCTCATCACGCCGGGCTTCCTTCAGGACCCCTGGTGCAAGTACCAGATGCTGCAGG
CCCTGACCGAGGCTCCAGGGGCCGAGGGCTGCACCATCCCCCTGCTGTCGGGCCTCAGCAGAGCTGCCTA
CCCACCTGAGCTCCGATTCATGTACTACGTCGATGGCAGGGGCCCTGATGGTGGCTTTCGTCAAGTCAAA
GAAGCTGTCATGCGTTGTAAGCTACTACAGGAGGGAGAAGGGGAACGGGATTCAGCTACAGTATCTGATC
TACTTTGA

Translation (235 aa):
MASSTSLPAPGSRPKKPLGKMADWFRQTLLKKPKKRPNSPESTSSDASQPTSQDSPLPPSLSSVTSPSLP
PTHASDSGSSRWSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSS
HCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVK
EAVMRCKLLQEGEGERDSATVSDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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