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Report for CCDS6023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6023.1 Public Homo sapiens 8 HR 24 110 108 CCDS HistoryNCBI Gene:55806Re-query CCDS DB by CCDS ID:6023.1Re-query CCDS DB by GeneID:55806See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312841.9 ENSP00000326765.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000312841.9Link to Ensembl Protein Viewer:ENSP00000326765.8Re-query CCDS DB by Nucleotide ID:ENST00000312841Re-query CCDS DB by Protein ID:ENSP00000326765
Original member Current member NCBI NM_018411.4 NP_060881.2 Accepted alive Link to Nucleotide Sequence:NM_018411.4Link to Protein Sequence:NP_060881.2Re-query CCDS DB by Nucleotide ID:NM_018411Re-query CCDS DB by Protein ID:NP_060881Link to BLAST:NP_060881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060881.2 1134 O43593-2 1134 100% 0 0

Chromosomal Locations for CCDS 6023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22115700 22115762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22116300 22116428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22118950 22119065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22119164 22119283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22119760 22119890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120104 22120173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120342 22120507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120716 22120958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22121065 22121228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22121613 22121694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22122493 22122608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22122790 22122879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22123649 22123813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22125311 22125504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22125582 22125732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22127037 22127829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22128559 22129170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGGAGAGTACGCCCAGCTTCCTGAAGGGCACCCCAACCTGGGAGAAGACGGCCCCAGAGAACGGCATCG
TGAGACAGGAGCCCGGCAGCCCGCCTCGAGATGGACTGCACCATGGGCCGCTGTGCCTGGGAGAGCCTGC
TCCCTTTTGGAGGGGCGTCCTGAGCACCCCAGACTCCTGGCTTCCCCCTGGCTTCCCCCAGGGCCCCAAG
GACATGCTCCCACTTGTGGAGGGCGAGGGCCCCCAGAATGGGGAGAGGAAGGTCAACTGGCTGGGCAGCA
AAGAGGGACTGCGCTGGAAGGAGGCCATGCTTACCCATCCGCTGGCATTCTGCGGGCCAGCGTGCCCACC
TCGCTGTGGCCCCCTGATGCCTGAGCATAGTGGTGGCCATCTCAAGAGTGACCCTGTGGCCTTCCGGCCC
TGGCACTGCCCTTTCCTTCTGGAGACCAAGATCCTGGAGCGAGCTCCCTTCTGGGTGCCCACCTGCTTGC
CACCCTACCTAGTGTCTGGCCTGCCCCCAGAGCATCCATGTGACTGGCCCCTGACCCCGCACCCCTGGGT
ATACTCCGGGGGCCAGCCCAAAGTGCCCTCTGCCTTCAGCTTAGGCAGCAAGGGCTTTTACTACAAGGAT
CCGAGCATTCCCAGGTTGGCAAAGGAGCCCTTGGCAGCTGCGGAACCTGGGTTGTTTGGCTTAAACTCTG
GTGGGCACCTGCAGAGAGCCGGGGAGGCCGAACGCCCTTCACTGCACCAGAGGGATGGAGAGATGGGAGC
TGGCCGGCAGCAGAATCCTTGCCCGCTCTTCCTGGGGCAGCCAGACACTGTGCCCTGGACCTCCTGGCCC
GCTTGTCCCCCAGGCCTTGTTCATACTCTTGGCAACGTCTGGGCTGGGCCAGGCGATGGGAACCTTGGGT
ACCAGCTGGGGCCACCAGCAACACCAAGGTGCCCCTCTCCTGAGCCGCCTGTCACCCAGCGGGGCTGCTG
TTCATCCTACCCACCCACTAAAGGTGGGGGTCTTGGCCCTTGTGGGAAGTGCCAGGAGGGCCTGGAGGGG
GGTGCCAGTGGAGCCAGCGAACCCAGCGAGGAAGTGAACAAGGCCTCTGGCCCCAGGGCCTGTCCCCCCA
GCCACCACACCAAGCTGAAGAAGACATGGCTCACACGGCACTCGGAGCAGTTTGAATGTCCACGCGGCTG
CCCTGAGGTCGAGGAGAGGCCGGTTGCTCGGCTCCGGGCCCTCAAAAGGGCAGGCAGCCCCGAGGTCCAG
GGAGCAATGGGCAGTCCAGCCCCCAAGCGGCCACCGGACCCTTTTCCAGGCACTGCAGAACAGGGGGCTG
GGGGTTGGCAGGAGGTGCGGGACACATCGATAGGGAACAAGGATGTGGACTCGGGACAGCATGATGAGCA
GAAAGGACCCCAAGATGGCCAGGCCAGTCTCCAGGACCCGGGACTTCAGGACATACCATGCCTGGCTCTC
CCTGCAAAACTGGCTCAATGCCAAAGTTGTGCCCAGGCAGCTGGAGAGGGAGGAGGGCACGCCTGCCACT
CTCAGCAAGTGCGGAGATCGCCTCTGGGAGGGGAGCTGCAGCAGGAGGAAGACACAGCCACCAACTCCAG
CTCTGAGGAAGGCCCAGGGTCCGGCCCTGACAGCCGGCTCAGCACAGGCCTCGCCAAGCACCTGCTCAGT
GGTTTGGGGGACCGACTGTGCCGCCTGCTGCGGAGGGAGCGGGAGGCCCTGGCTTGGGCCCAGCGGGAAG
GCCAAGGGCCAGCCGTGACAGAGGACAGCCCAGGCATTCCACGCTGCTGCAGCCGTTGCCACCATGGACT
CTTCAACACCCACTGGCGATGTCCCCGCTGCAGCCACCGGCTGTGTGTGGCCTGTGGTCGTGTGGCAGGC
ACTGGGCGGGCCAGGGAGAAAGCAGGCTTTCAGGAGCAGTCCGCGGAGGAGTGCACGCAGGAGGCCGGGC
ACGCTGCCTGTTCCCTGATGCTGACCCAGTTTGTCTCCAGCCAGGCTTTGGCAGAGCTGAGCACTGCAAT
GCACCAGGTCTGGGTCAAGTTTGATATCCGGGGGCACTGCCCCTGCCAAGCTGATGCCCGGGTATGGGCC
CCCGGGGATGCAGGCCAGCAGAAGGAATCAACACAGAAAACGCCCCCAACTCCACAACCTTCCTGCAATG
GCGACACCCACAGGACCAAGAGCATCAAAGAGGAGACCCCCGATTCCGCTGAGACCCCAGCAGAGGACCG
TGCTGGCCGAGGGCCCCTGCCTTGTCCTTCTCTCTGCGAACTGCTGGCTTCTACCGCGGTCAAACTCTGC
TTGGGCCATGAGCGAATACACATGGCCTTCGCCCCCGTCACTCCGGCCCTGCCCAGTGATGACCGCATCA
CCAACATCCTGGACAGCATTATCGCACAGGTGGTGGAACGGAAGATCCAGGAGAAAGCCCTGGGGCCGGG
GCTTCGAGCTGGCCCGGGTCTGCGCAAGGGCCTGGGCCTGCCCCTCTCTCCAGTGCGGCCCCGGCTGCCT
CCCCCAGGGGCTTTGCTGTGGCTGCAGGAGCCCCAGCCTTGCCCTCGGCGTGGCTTCCACCTCTTCCAGG
AGCACTGGAGGCAGGGCCAGCCTGTGTTGGTGTCAGGGATCCAAAGGACATTGCAGGGCAACCTGTGGGG
GACAGAAGCTCTTGGGGCACTTGGAGGCCAGGTGCAGGCGCTGAGCCCCCTCGGACCTCCCCAGCCCAGC
AGCCTGGGCAGCACAACATTCTGGGAGGGCTTCTCCTGGCCTGAGCTTCGCCCAAAGTCAGACGAGGGCT
CTGTCCTCCTGCTGCACCGAGCTTTGGGGGATGAGGACACCAGCAGGGTGGAGAACCTAGCTGCCAGTCT
GCCACTTCCGGAGTACTGCGCCCTCCATGGAAAACTCAACCTGGCTTCCTACCTCCCACCGGGCCTTGCC
CTGCGTCCACTGGAGCCCCAGCTCTGGGCAGCCTATGGTGTGAGCCCGCACCGGGGACACCTGGGGACCA
AGAACCTCTGTGTGGAGGTGGCCGACCTGGTCAGCATCCTGGTGCATGCCGACACACCACTGCCTGCCTG
GCACCGGGCACAGAAAGACTTCCTTTCAGGCCTGGACGGGGAGGGGCTCTGGTCTCCGGGCAGCCAGGTC
AGCACTGTGTGGCACGTGTTCCGGGCACAGGACGCCCAGCGCATCCGCCGCTTTCTCCAGATGGTGCAGG
GCCTGGTGAGCACAGTCAGCGTCACTCAGCACTTCCTCTCCCCTGAGACCTCTGCCCTCTCTGCTCAGCT
CTGCCACCAGGGACCCAGCCTTCCCCCTGACTGCCACCTGCTTTATGCCCAGATGGACTGGGCTGTGTTC
CAAGCAGTGAAGGTGGCCGTGGGGACATTACAGGAGGCCAAATAG

Translation (1134 aa):
MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSWLPPGFPQGPK
DMLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCGPLMPEHSGGHLKSDPVAFRP
WHCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWPLTPHPWVYSGGQPKVPSAFSLGSKGFYYKD
PSIPRLAKEPLAAAEPGLFGLNSGGHLQRAGEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWP
ACPPGLVHTLGNVWAGPGDGNLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEG
GASGASEPSEEVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
GAMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQKGPQDGQASLQDPGLQDIPCLAL
PAKLAQCQSCAQAAGEGGGHACHSQQVRRSPLGGELQQEEDTATNSSSEEGPGSGPDSRLSTGLAKHLLS
GLGDRLCRLLRREREALAWAQREGQGPAVTEDSPGIPRCCSRCHHGLFNTHWRCPRCSHRLCVACGRVAG
TGRAREKAGFQEQSAEECTQEAGHAACSLMLTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWA
PGDAGQQKESTQKTPPTPQPSCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLC
LGHERIHMAFAPVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
PPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNLWGTEALGALGGQVQALSPLGPPQPS
SLGSTTFWEGFSWPELRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLPEYCALHGKLNLASYLPPGLA
LRPLEPQLWAAYGVSPHRGHLGTKNLCVEVADLVSILVHADTPLPAWHRAQKDFLSGLDGEGLWSPGSQV
STVWHVFRAQDAQRIRRFLQMVQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVF
QAVKVAVGTLQEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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