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Report for CCDS29195.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29195.2 Public Mus musculus 18 Rell2 23 108 98 CCDS HistoryNCBI Gene:225392Re-query CCDS DB by CCDS ID:29195.2See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 29195.2
The coding region has been updated to represent an alternate splice variant that is more supported by the available transcript and protein data. The update removes two introns in the 3' CDS and 3' UTR and changes and extends the C-terminus.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29195.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070709.8 ENSMUSP00000070280.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070709.8Link to Ensembl Protein Viewer:ENSMUSP00000070280.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070709Re-query CCDS DB by Protein ID:ENSMUSP00000070280
Original member Current member EBI ENSMUST00000176104.7 ENSMUSP00000135556.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176104.7Link to Ensembl Protein Viewer:ENSMUSP00000135556.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176104Re-query CCDS DB by Protein ID:ENSMUSP00000135556
Original member Current member EBI ENSMUST00000177058.7 ENSMUSP00000135615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177058.7Link to Ensembl Protein Viewer:ENSMUSP00000135615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177058Re-query CCDS DB by Protein ID:ENSMUSP00000135615
Original member Current member NCBI NM_153793.2 NP_722488.2 Accepted alive Link to Nucleotide Sequence:NM_153793.2Link to Protein Sequence:NP_722488.2Re-query CCDS DB by Nucleotide ID:NM_153793Re-query CCDS DB by Protein ID:NP_722488Link to BLAST:NP_722488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722488.2 303 Q8BRJ3 303 100% 0 0

Chromosomal Locations for CCDS 29195.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37956384 37956567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37956929 37956994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37957089 37957155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37957589 37957774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37958014 37958389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37958512 37958544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGTCGGAACCACAGCCTGACCTGGAGCCGCCCCAACATGGGCTGTACATGCTCTTCCTGCTTGTGCTGG
TCTTCTTCCTCATGGGCCTTGTAGGCTTCATGATCTGCCACGTGCTCAAGAAGAAAGGCTACCGCTGCCG
CACGTCTAGGGGCTCAGAGCCTGATGATGCCCAGCTCCAGCCCCCTGAAGACGATGACGTGAATGAGGAC
ACAGTAGAGCGGATTGTTCGCTGCATCATCCAAAATGAAGCCAATGCTGAGGCCTTGAAGGAGATGCTAG
GGGACAGTGAAGGAGAAGGGACGGTGCAGCTCTCCAGTGTGGATGCCACCTCCAGCCTGCAGGACGGAGC
CCCCTCCCATCATCACACAGTGCACCTTGGCTCTGCAGCTCCTTGCATCCACTGCAGCCGCAGCAAGAGG
CCCCCACTTGTCCGTCAGGGTCGCTCTAAGGAAGGAAAAAGCCGTCCCAGACCTGGAGAGACCACTGTTT
TTTCAGTGGGCAGATTCCGAGTAACACACATTGAGAAGCGCTACGGCCTACATGAACATCGTGATGGTTC
CCCTACGGACAGAAGCTGGGGCTCTGGTGGAGGGCAGGAGCCAGGGGGTAGTCAGGCGGCTGGAGGAGGG
CAGCCTAGGACAGGGACAGCTGCCATTGAGAGGCTGCTCCCTGAGCCGCCACCCTCCCAGGCCGCAGCCA
CCCACTCAGTGCAGAACGGAAGACTCCAGGATGCCAGCCTCGTCCCTTGTACACTTGAGGGGACCCCTGG
AACCTCTGCAGAACTGAACTTGGGCCCTAGAGGGAGAGACCCAAGCCCAGGGCTGTCTAGTCAAGAAGCA
AATGGACAGCCAACCAAACTGGACACCTCAGGTCAGCAGGAGTCTCTACCACCAGAAGCAGGGGGTATGT
GA

Translation (303 aa):
MSEPQPDLEPPQHGLYMLFLLVLVFFLMGLVGFMICHVLKKKGYRCRTSRGSEPDDAQLQPPEDDDVNED
TVERIVRCIIQNEANAEALKEMLGDSEGEGTVQLSSVDATSSLQDGAPSHHHTVHLGSAAPCIHCSRSKR
PPLVRQGRSKEGKSRPRPGETTVFSVGRFRVTHIEKRYGLHEHRDGSPTDRSWGSGGGQEPGGSQAAGGG
QPRTGTAAIERLLPEPPPSQAAATHSVQNGRLQDASLVPCTLEGTPGTSAELNLGPRGRDPSPGLSSQEA
NGQPTKLDTSGQQESLPPEAGGM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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