NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40688.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40688.1 Public Mus musculus 9 Rsl24d1 23 108 98 CCDS HistoryNCBI Gene:225215Re-query CCDS DB by CCDS ID:40688.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40688.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034738.13 ENSMUSP00000034738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034738.13Link to Ensembl Protein Viewer:ENSMUSP00000034738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034738Re-query CCDS DB by Protein ID:ENSMUSP00000034738
Original member Current member NCBI NM_198609.2 NP_941011.1 Accepted alive Link to Nucleotide Sequence:NM_198609.2Link to Protein Sequence:NP_941011.1Re-query CCDS DB by Nucleotide ID:NM_198609Re-query CCDS DB by Protein ID:NP_941011Link to BLAST:NP_941011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941011.1 163 Q99L28 163 100% 0 0

Chromosomal Locations for CCDS 40688.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 73113503 73113583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73114888 73115001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73116407 73116479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73117882 73117945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73121202 73121287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 73122264 73122337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGAGGATCGAAAAGTGTTATTTCTGCTCCGGGCCGATCTACCCGGGGCACGGCATGATGTTCGTCCGCA
ACGATTGCAAGGTGTTCCGATTCTGCAAATCCAAGTGTCATAAAAACTTTAAGAAGAAGAGAAACCCACG
CAAGGTCAGGTGGACTAAAGCCTTCCGGAAAGCAGCTGGCAAGGAGCTCACGGTGGACAACTCATTTGAA
TTTGAAAAACGTAGAAATGAACCTGTGAAATACCAGCGTGAGCTGTGGAATAAAACTATTGATGCCATGA
AGAGAGTTGAAGAGATCAAACAGAAGCGCCAGGCCAAATTTATAATGAACAGGTTGAAGAAGAACAAAGA
GCTCCAGAAGGTGCAGGACATCAAGGAGGTCAAGCAGAACATCCATCTCATCCGGGCTCCTCTCGCTGGC
AAAGGAAAGCAGCTGGAGGAAAAAATGGTCCAGCAGTTACAGGAGGATGTGGACATGGAGGAAGCTTCCT
AA

Translation (163 aa):
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFE
FEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLAG
KGKQLEEKMVQQLQEDVDMEEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH