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Report for CCDS29069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29069.1 Public Mus musculus 18 Hrh4 23 108 98 CCDS HistoryNCBI Gene:225192Re-query CCDS DB by CCDS ID:29069.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041676.2 ENSMUSP00000041061.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041676.2Link to Ensembl Protein Viewer:ENSMUSP00000041061.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000041676Re-query CCDS DB by Protein ID:ENSMUSP00000041061
Original member Current member NCBI NM_153087.2 NP_694727.1 Accepted alive Link to Nucleotide Sequence:NM_153087.2Link to Protein Sequence:NP_694727.1Re-query CCDS DB by Nucleotide ID:NM_153087Re-query CCDS DB by Protein ID:NP_694727Link to BLAST:NP_694727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694727.1 391 Q91ZY2 391 100% 0 0

Chromosomal Locations for CCDS 29069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13007050 13007242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13015776 13015939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13021763 13022581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGTCGGAGTCTAACAGTACTGGCATCTTGCCACCAGCTGCTCAGGTCCCCTTGGCATTTTTAATGTCTT
CATTTGCCTTTGCTATAATGGTAGGCAATGCTGTGGTCATCTTAGCCTTTGTGGTGGACAGAAACCTTAG
ACATCGAAGTAATTATTTTTTTCTTAATTTGGCTATTTCTGACTTCCTCGTGGGTTTGATTTCCATTCCT
CTGTACATCCCTCACGTGTTGTTTAACTGGAATTTTGGAAGTGGAATCTGCATGTTTTGGCTCATTACTG
ACTATCTTTTGTGCACCGCATCTGTCTACAATATTGTCCTCATTAGCTACGATCGATACCAGTCAGTTTC
AAATGCTGTGTCTTATAGGGCTCAACACACTGGCATCATGAAGATTGTTGCTCAAATGGTGGCTGTTTGG
ATACTGGCTTTCTTGGTAAATGGCCCGATGATTCTGGCTTCAGATTCTTGGAAGAACAGCACGAACACAA
AGGACTGTGAGCCTGGCTTTGTTACAGAGTGGTACATCCTCACCATTACAATGCTCTTGGAATTCCTGCT
TCCTGTCATCTCTGTGGCTTATTTCAATGTACAGATTTACTGGAGCCTGTGGAAGCGTAGGGCTCTCAGT
AGGTGCCCTAGCCATGCTGGATTCTCCACTACCTCTTCCAGTGCTTCAGGACACTTACACAGAGCTGGGG
TGGCTTGCAGGACAAGTAATCCTGGATTGAAGGAATCAGCTGCATCTCGTCACTCAGAAAGTCCTCGAAG
AAAGAGCAGCATCCTGGTGTCCTTAAGGACTCACATGAACAGCAGTATCACTGCCTTCAAAGTGGGTTCC
TTCTGGCGATCGGAAAGTGCAGCGCTTCGCCAAAGGGAGTACGCAGAGCTTCTCAGAGGCAGGAAGCTAG
CCAGGTCACTGGCCATCCTTCTGAGCGCTTTTGCCATTTGCTGGGCTCCATACTGTCTGTTCACAATTGT
CCTTTCAACTTACCCCAGAACGGAACGCCCCAAATCGGTGTGGTACAGCATTGCCTTCTGGCTGCAATGG
TTCAATTCGTTTGTTAATCCCTTTCTGTACCCTTTGTGTCACAGGCGTTTCCAGAAGGCTTTCTGGAAGA
TACTTTGTGTGACAAAGCAACCAGCGCTGTCACAGAACCAGTCAGTATCTTCTTGA

Translation (391 aa):
MSESNSTGILPPAAQVPLAFLMSSFAFAIMVGNAVVILAFVVDRNLRHRSNYFFLNLAISDFLVGLISIP
LYIPHVLFNWNFGSGICMFWLITDYLLCTASVYNIVLISYDRYQSVSNAVSYRAQHTGIMKIVAQMVAVW
ILAFLVNGPMILASDSWKNSTNTKDCEPGFVTEWYILTITMLLEFLLPVISVAYFNVQIYWSLWKRRALS
RCPSHAGFSTTSSSASGHLHRAGVACRTSNPGLKESAASRHSESPRRKSSILVSLRTHMNSSITAFKVGS
FWRSESAALRQREYAELLRGRKLARSLAILLSAFAICWAPYCLFTIVLSTYPRTERPKSVWYSIAFWLQW
FNSFVNPFLYPLCHRRFQKAFWKILCVTKQPALSQNQSVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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