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Report for CCDS51470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51470.1 Public Mus musculus 5 Sh3bp2 23 108 98 CCDS HistoryNCBI Gene:24055Re-query CCDS DB by CCDS ID:51470.1Re-query CCDS DB by GeneID:24055See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118545.7 ENSMUSP00000112554.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118545.7Link to Ensembl Protein Viewer:ENSMUSP00000112554.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118545Re-query CCDS DB by Protein ID:ENSMUSP00000112554
Original member Current member NCBI NM_001145859.1 NP_001139331.1 Accepted alive Link to Nucleotide Sequence:NM_001145859.1Link to Protein Sequence:NP_001139331.1Re-query CCDS DB by Nucleotide ID:NM_001145859Re-query CCDS DB by Protein ID:NP_001139331Link to BLAST:NP_001139331.1

Chromosomal Locations for CCDS 51470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34549633 34549796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34551561 34551700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34552737 34552839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555457 34555574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34555942 34556012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34556891 34556979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34557295 34557363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34559001 34559649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560344 34560452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34560689 34560744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561026 34561107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34561603 34561662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34562359 34562496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCGGGCTCAGGGTCGCGGCCGCGGAGCTGGGGCTGGCGAGAGACAGGCTCCAGGGACGAGGCTGCGG
CCGGTGGGCCCACCTCGGGACCCTGTCGCTGCTCACAGGGAAGGCGGGCGCTGGCCGCCCCCCGGAAGCC
GGCTGTGCCCGCCGCGTGGACACCCTTCATGGCGGCTGAGGAGATGCAGTGGCCTGTCCCCATGAAGGCC
ATTGGTGCCCAGAATTTGCTGACCATGCCTGGTGGTGTGGCGAAGGCTGGTTACCTGCATAAGAAGGGTG
GCACCCAACTGCAGCTGCTCAAATGGCCCCTCCGCTTTGTGATCATCCACAAGCGCTGCATCTACTACTT
CAAGAGCAGCACATCTGCCTCCCCACAGGGTGCCTTCTCACTGAGTGGCTACAACAGAGTGATGCGAGCA
GCTGAGGAGACCACGTCCAACAATGTCTTCCCATTCAAGATCATTCACATCAGCAAGAAGCACCGAACAT
GGTTCTTCTCAGCGTCCTCTGAGGATGAGCGCAAGAGCTGGATGGCCTTGCTACGCAGGGAAATTGGCCA
CTTCCATGAGAAGAAGGAACTACCTCTAGACACCAGCGACTCTAGCTCAGACACGGACAGCTTCTATGGT
GCAGTTGAGCGACCTATAGATATCAGCCTGTCTTCATATCCCATGGACAATGAAGATTACGAACATGAAG
ATGAGGACGACTCGTACCTGGAGCCTGATTCCCCGGGGCCCATGAAGCTTGAAGATGCCCTGACCTATCC
ACCAGCCTACCCACCACCCCCTGTGCCTGTACCTCGGAAGCCAGCCTTCTCTGACTTGCCCCGTGCCCAC
TCGTTCACCTCTAAAAGTCCAAGTCCCTTACTGCCACCCCCACCTCCTAAGCGAGGCCTTCCAGACACTG
GCTCTGCCCCTGAGGATGCTAAGGACGCATTGGGCCTGAGGCGAGTAGAGCCTGGCCTCAGGGTGCCTGC
CACCCCTCGGAGGATGAGTGACCCCCCAATGAGCAATGTACCCACCGTGCCCAACCTCCGGAAACATCCT
TGCTTCCGGGACAGTGTGAATCCCGGCCTAGAACCCTGGACCCCTGGCCATGGGACTAGCTCTGTCTCCA
GCTCTACCACCATGGCCGTTGCCACCTCTAGGAACTGTGACAAACTCAAGTCATTCCACCTGTCTTCCCG
AGGGCCACCCACATCTGAGCCCCCACCCGTGCCTGCTAATAAGCCCAAGTTCCTGAAGATAGCTGAAGAA
CCTTCCCCGAGGGAGGCAGCCAAGTTTGCACCTGTGCCCCCTGTGGCCCCCAGGCCTCCTGTGCAGAAGA
TGCCCATGCCTGAGGCTACTGTTCGGCCTGCAGTGCTGCCTAGACCAGAGAACACACCTCTTCCTCACCT
CCAGCGATCCCCCCCTGATGGACAGAGTTTCAGGGGCTTCTCCTTTGAAAAGGCCCGCCAGCCCTCACAG
GCTGACACTGGCGAGGAGGACTCAGATGAAGACTATGAGAAGGTGCCGCTGCCTAACTCGGTGTTTGTCA
ACACGACAGAGTCCTGCGAGGTGGAAAGGTTGTTCAAAGCTACGGACCCCCGTGGAGAGCCTCAGGATGG
GCTGTATTGCATTCGGAACTCCTCTACCAAGTCAGGGAAGGTTTTGGTCGTGTGGGATGAATCTTCTAAC
AAAGTGAGGAATTATCGCATCTTTGAAAAGGATTCTAAGTTCTACCTGGAAGGTGAGGTTCTGTTTGCCA
GTGTGGGCAGCATGGTGGAGCACTACCACACCCATGTGCTGCCCAGCCATCAGAGCCTGTTGCTGCGGCA
CCCATACGGCTACGCTGGGCCCAGGTGA

Translation (615 aa):
MAGSGSRPRSWGWRETGSRDEAAAGGPTSGPCRCSQGRRALAAPRKPAVPAAWTPFMAAEEMQWPVPMKA
IGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRA
AEETTSNNVFPFKIIHISKKHRTWFFSASSEDERKSWMALLRREIGHFHEKKELPLDTSDSSSDTDSFYG
AVERPIDISLSSYPMDNEDYEHEDEDDSYLEPDSPGPMKLEDALTYPPAYPPPPVPVPRKPAFSDLPRAH
SFTSKSPSPLLPPPPPKRGLPDTGSAPEDAKDALGLRRVEPGLRVPATPRRMSDPPMSNVPTVPNLRKHP
CFRDSVNPGLEPWTPGHGTSSVSSSTTMAVATSRNCDKLKSFHLSSRGPPTSEPPPVPANKPKFLKIAEE
PSPREAAKFAPVPPVAPRPPVQKMPMPEATVRPAVLPRPENTPLPHLQRSPPDGQSFRGFSFEKARQPSQ
ADTGEEDSDEDYEKVPLPNSVFVNTTESCEVERLFKATDPRGEPQDGLYCIRNSSTKSGKVLVVWDESSN
KVRNYRIFEKDSKFYLEGEVLFASVGSMVEHYHTHVLPSHQSLLLRHPYGYAGPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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