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Report for CCDS16489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16489.1 Public Mus musculus 2 Hipk3 23 108 98 CCDS HistoryNCBI Gene:15259Re-query CCDS DB by CCDS ID:16489.1Re-query CCDS DB by GeneID:15259See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028600.13 ENSMUSP00000028600.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028600.13Link to Ensembl Protein Viewer:ENSMUSP00000028600.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028600Re-query CCDS DB by Protein ID:ENSMUSP00000028600
Original member Current member EBI ENSMUST00000111124.7 ENSMUSP00000106753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111124.7Link to Ensembl Protein Viewer:ENSMUSP00000106753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111124Re-query CCDS DB by Protein ID:ENSMUSP00000106753
Original member Current member NCBI NM_010434.2 NP_034564.2 Accepted alive Link to Nucleotide Sequence:NM_010434.2Link to Protein Sequence:NP_034564.2Re-query CCDS DB by Nucleotide ID:NM_010434Re-query CCDS DB by Protein ID:NP_034564Link to BLAST:NP_034564.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034564.2 1192 Q9ERH7 1192 100% 0 0

Chromosomal Locations for CCDS 16489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 104429855 104430331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104430727 104430854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104431152 104431387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104433168 104433308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104433555 104433845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104434338 104434499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104434590 104434717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104434936 104435057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104436997 104437120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104437851 104438007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104439230 104439414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104440206 104440292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104441245 104441364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104446512 104446635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 104470749 104471845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3579 nt):
ATGGCCTCACAAGTCTTGGTCTACCCACCGTATGTTTATCAAACTCAGTCAAGTGCCTTTTGTAGTGTGA
AGAAACTCAAAGTAGAGCCAAGCGGTTGTGTTTTCCAGGAAAGAACCTATCCTCAGATCCATGTGAATGG
TAGAAACTTTGGCAATTCTCATCCTTCCACGAAAGGTAGTGCTTTCCAGACAAAGATACCATTTACTAAA
CCTCGAGGACACAGCTTTTCATTGCAGGCAGGTGCCATTGTTGTCAAAGACACTGCCGGTGCTACAAAGG
TCCTAGCAGCTCAGGCGCAGCAGGCTGGAGTGGAGGCACCGCGGGCCGTGGTGTGGAGAAACAGGTTACA
TTTCCTAGAAGGGCCCCAGCGATGCGGGTTAAAGCGCAAGAGTGAGGAGTTGGAGAATCACAGCGGCGCG
ATGCAGATTGTTGATGAACTGTCCATACTTCCTGCAATGTTGCAAACCAACATGGGAAACCCAGTGACAG
TTGTGACAGCGACCACAGGATCGAAGCAGAACTGCACCAGCGGGGAAGGCGACTATCAGTTAGTGCAGCA
TGAAGTCCTTTGCTCTATGAAAAACACGTATGAAGTCCTGGATTTTCTTGGTCGTGGCACTTTTGGCCAG
GTTGTCAAATGCTGGAAGAGAGGGACAAATGAAATTGTAGCCATTAAAATTTTGAAGAATCACCCTTCGT
ATGCACGTCAAGGGCAGATAGAAGTGAGCATCTTGGCAAGGCTGAGTACAGAGAACGCTGATGAGTATAA
CTTTGTGCGAGCCTATGAGTGCTTCCAGCACCGTAACCACACCTGCCTAGTCTTTGAGATGCTGGAGCAG
AACCTGTATGACTTCCTGAAACAGAATAAATTCAGTCCCCTGCCCCTGAAGGTGATCCGGCCTGTTCTTC
AGCAAGTGGCCACTGCACTGAAGAAATTAAAAAGTCTTGGTTTAATTCATGCTGACCTCAAACCAGAGAA
TATTATGTTGGTGGATCCTGTTCGCCAGCCGTACAGGGTTAAAGTGATAGACTTTGGATCGGCCAGTCAT
GTATCAAAGACTGTTTGCTCAACGTATCTTCAATCTCGCTACTACAGAGCTCCAGAGATTATATTGGGGT
TGCCGTTTTGTGAAGCCATAGACATGTGGTCACTGGGATGCGTGATCGCAGAGTTATTCCTTGGATGGCC
ACTCTACCCAGGAGCCTTGGAGTATGATCAGATCCGATACATTTCTCAGACTCAAGGTTTACCAGGAGAG
CAATTGTTGAATGTGGGTACAAAATCCACAAGATTTTTTTGCAGAGAAACAGATATGTCTCATTCTGGTT
GGAGGTTAAAGACACTGGAAGAGCATGAGGCAGAGACAGGAATGAAGTCTAAAGAGGCCAGAAAGTACAT
ATTCAACAGTCTGGACGATATAGTGCATGTGAACACAGTGATGGACTTGGAAGGAGGTGATCTCTTGGCT
GAGAAAGCTGATAGAAGAGAATTTGTTAATCTGTTGAAGAAAATGTTGCTGATTGATGCAGATTTAAGAA
TTACTCCAATTGAGACTCTGAACCACCCATTCGTTAATATGAAGCATCTACTAGATTTTCCTCACAGCAA
CCATGTAAAGTCCTGTTTTCATATCATGGATATTTGTAAGTCTCCGAGTTCATGTGAAACAAATAACCAC
AGTAAAATGTCACTCTTACGACCAGTCGCATCGAATGGCACTGCTGCTCTAGCAGCAAACTTTACTAAAG
TCGGGACACTAAGAAGTCAGGCGTTAACCACATCTGCTCACTCTGTTGTGCACCATGGCATACCTCTGCA
GGCGGGGACTGCACAGTTCGGTTGTGGAGATGCTTTTCATCAGACCCTGATTATCTGTCCCCCAGCTATC
CAAGGTATTCCTGCAGCACATGGTAAACCCACCAGTTATTCCATAAGGGTAGACAATACAGTTCCGCTTG
TAACTCAGGCCCCAGCTGTGCAGCCTCTGCAGATCCGACCTGGAGTCCTTTCACAGCAGACATGGTCTGG
TCGAACACAGCAGATGCTAATACCTGCCTGGCAGCAGGTAACACCCATGGCTCCTGCTGCCGCAACACTA
ACTTCTGAAGGCATGGCTGGTTCTCAGAGGCTTGGAGACTGGGGGAAAATGATTCCACACAGCAATCATT
ACAACTCGGTGATGCCACCGCCTCTTCTAACCAACCAGATCACATTATCAGCCCCTCAGCCTATCAGCGT
GGGCATTGCACATGTTGTCTGGCCTCAGCCTGCCACTACCAAGAAAAATAAGTTGTGCCAGAACAGGAGT
AATTCATTGCAGAACACCAATATCCCACATTCAGCATTTATTTCTCCAAAGATAATCAGTGGGAAAGAGG
TTGAGGAAGTAAGTTGTGTAGACACACAGGACAATCATACCTCAGAAGGAGAGGCCGGAACTTGCCGTGA
AGCGTCTGTCAGACAGGATTCTTCAGTCTCAGACAAACAGCGGCAAACCATCATCATTGCCGACTCCCCG
AGTCCTGCCGTGAGTGTGATCACCATTAGCAGTGACAGCGATGATGAAGAGACCTCACCCAGACCTTCAC
TCCGAGAGTGTAAAGGTAGTCTAGATTGTGAAGCTTGCCAAAGCACTTTGAATATTGATCGGATGTGTTC
ACTCAGCAGTCCTGATAGCACTCTGAGCACCAGCTCCTCAGGGCAGTCCAGCCCGTCCCCTTGCAAGAGA
CCGAACAGCATGTCAGATGATGAACAAGAAAGCGGGTGTGAGACTGTGGATGGCTCTCCAACATCAGACT
CCTCGGGGCACGACAGTCCATTTGCAGAGAACAGTTTTGTGGAGGATGCTCATCAGAACACAGAGCTGGG
GACCTGTGCTGGCCCAGAAGCCAAGCCAGCTGTTGGCACTGCTGTGGAGCCACCGGTGGGGAGAGAAAGT
GGACTGAGTGTTGACGAGCACATGGCAAACACGGATTCTACATGCCAGCCATTGAGAAAAGGCCAGCCTG
CCCCCGGAAAGCTGCACCAGCCTCCTGCCCTGGGCGCTCGTCAGCAGAAGCCCGCAGCAGCGTTCCCTCA
GCAGCATTTGAACCTGAGCCAGGTTCAGCATTTCGGAACTGGGCATCAAGAATGGAATGGAAACTTTGGG
CATCGAAGACAGCAAGCATATATTCCTACTAGTGTTACCAGTAATCCATTCACGCTTTCTCATGGAAGTC
CTAACCACACAGCAGTACATGCCCATCTGGCTGGAAGTACACACCTCGGAGGACAGCCTACTCTGCTTCC
ATACCCATCATCAGCCTCCCTCAGTAGTGCTGCACCCGTGGCCCACCTCCTAGCCTCTCCGTGTACCTCA
AGACCTATGTTACAGCATCCAACTTACAATATCTCCCATCCCAGTGGCATAGTTCACCAAGTCCCAGTGG
GCATAAACCCCCGCCTGTTACCATCCCCAACCATTCATCAGACTCAGTACAAACCAATCTTCCCTCCACA
TTCTTACATTGCAGCATCACCTGCGTATACTGGATTTCCATTGAGTCCAACAAAACTCAGCCAGTATCCA
TATATGTGA

Translation (1192 aa):
MASQVLVYPPYVYQTQSSAFCSVKKLKVEPSGCVFQERTYPQIHVNGRNFGNSHPSTKGSAFQTKIPFTK
PRGHSFSLQAGAIVVKDTAGATKVLAAQAQQAGVEAPRAVVWRNRLHFLEGPQRCGLKRKSEELENHSGA
MQIVDELSILPAMLQTNMGNPVTVVTATTGSKQNCTSGEGDYQLVQHEVLCSMKNTYEVLDFLGRGTFGQ
VVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEYNFVRAYECFQHRNHTCLVFEMLEQ
NLYDFLKQNKFSPLPLKVIRPVLQQVATALKKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASH
VSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGE
QLLNVGTKSTRFFCRETDMSHSGWRLKTLEEHEAETGMKSKEARKYIFNSLDDIVHVNTVMDLEGGDLLA
EKADRREFVNLLKKMLLIDADLRITPIETLNHPFVNMKHLLDFPHSNHVKSCFHIMDICKSPSSCETNNH
SKMSLLRPVASNGTAALAANFTKVGTLRSQALTTSAHSVVHHGIPLQAGTAQFGCGDAFHQTLIICPPAI
QGIPAAHGKPTSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQQTWSGRTQQMLIPAWQQVTPMAPAAATL
TSEGMAGSQRLGDWGKMIPHSNHYNSVMPPPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNRS
NSLQNTNIPHSAFISPKIISGKEVEEVSCVDTQDNHTSEGEAGTCREASVRQDSSVSDKQRQTIIIADSP
SPAVSVITISSDSDDEETSPRPSLRECKGSLDCEACQSTLNIDRMCSLSSPDSTLSTSSSGQSSPSPCKR
PNSMSDDEQESGCETVDGSPTSDSSGHDSPFAENSFVEDAHQNTELGTCAGPEAKPAVGTAVEPPVGRES
GLSVDEHMANTDSTCQPLRKGQPAPGKLHQPPALGARQQKPAAAFPQQHLNLSQVQHFGTGHQEWNGNFG
HRRQQAYIPTSVTSNPFTLSHGSPNHTAVHAHLAGSTHLGGQPTLLPYPSSASLSSAAPVAHLLASPCTS
RPMLQHPTYNISHPSGIVHQVPVGINPRLLPSPTIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYP
YM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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