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Report for CCDS15964.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15964.2 Public Mus musculus 2 Ggta1 23 108 98 CCDS HistoryNCBI Gene:14594Re-query CCDS DB by CCDS ID:15964.2Re-query CCDS DB by GeneID:14594See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15964.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15964.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044255.12 ENSMUSP00000049408.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044255.12Link to Ensembl Protein Viewer:ENSMUSP00000049408.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044255Re-query CCDS DB by Protein ID:ENSMUSP00000049408
Original member Current member EBI ENSMUST00000102794.7 ENSMUSP00000099858.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102794.7Link to Ensembl Protein Viewer:ENSMUSP00000099858.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102794Re-query CCDS DB by Protein ID:ENSMUSP00000099858
Original member NCBI NM_010283.4 NP_034413.2 Updated not alive Link to Nucleotide Sequence:NM_010283.4Link to Protein Sequence:NP_034413.2Re-query CCDS DB by Nucleotide ID:NM_010283Re-query CCDS DB by Protein ID:NP_034413
Current member NCBI NM_010283.5 NP_034413.2 Accepted alive Link to Nucleotide Sequence:NM_010283.5Link to Protein Sequence:NP_034413.2Re-query CCDS DB by Nucleotide ID:NM_010283Re-query CCDS DB by Protein ID:NP_034413Link to BLAST:NP_034413.2

Chromosomal Locations for CCDS 15964.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 35402109 35402802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35407945 35408082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35413326 35413427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35414219 35414284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35416472 35416507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35422180 35422268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 35423232 35423327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGATCACTATGCTTCAAGATCTCCATGTCAACAAGATCTCCATGTCAAGATCCAAGTCAGAAACAAGTC
TTCCATCCTCAAGATCTGGATCACAGGAGAAAATAATGAATGTCAAGGGAAAAGTAATCCTGTTGATGCT
GATTGTCTCAACCGTGGTTGTCGTGTTTTGGGAATATGTCAACAGCCCAGAAGGCTCTTTCTTGTGGATA
TATCACACAAAAATTCCAGAGGTTGGTGAGAACAGATGGCAGAAGGACTGGTGGTTCCCAAGCTGGTTTA
AAAATGGGACCCACAGTTATCAAGAAGACAACGTAGAAGGACGGAGAGAAAAGGGTAGAAATGGAGATCG
CATTGAAGAGCCTCAGCTATGGGACTGGTTCAATCCAAAGAACCGCCCGGATGTTTTGACAGTGACCCCG
TGGAAGGCGCCGATTGTGTGGGAAGGCACTTATGACACAGCTCTGCTGGAAAAGTACTACGCCACACAGA
AACTCACTGTGGGGCTGACAGTGTTTGCTGTGGGAAAGTACATTGAGCATTACTTAGAAGACTTTCTGGA
GTCTGCTGACATGTACTTCATGGTTGGCCATCGGGTCATATTTTACGTCATGATAGACGACACCTCCCGG
ATGCCTGTCGTGCACCTGAACCCTCTACATTCCTTACAAGTCTTTGAGATCAGGTCTGAGAAGAGGTGGC
AGGATATCAGCATGATGCGCATGAAGACCATTGGGGAGCACATCCTGGCCCACATCCAGCACGAGGTCGA
CTTCCTCTTCTGCATGGACGTGGATCAAGTCTTTCAAGACAACTTCGGGGTGGAAACTCTGGGCCAGCTG
GTAGCACAGCTCCAGGCCTGGTGGTACAAGGCCAGTCCCGAGAAGTTCACCTATGAGAGGCGGGAACTGT
CGGCCGCGTACATTCCATTCGGAGAGGGGGATTTTTACTACCACGCGGCCATTTTTGGAGGAACGCCTAC
TCACATTCTCAACCTCACCAGGGAGTGCTTTAAGGGGATCCTCCAGGACAAGAAACATGACATAGAAGCC
CAGTGGCATGATGAGAGCCACCTCAACAAATACTTCCTTTTCAACAAACCCACTAAAATCCTATCTCCAG
AGTATTGCTGGGACTATCAGATAGGCCTGCCTTCAGATATTAAAAGTGTCAAGGTAGCTTGGCAGACAAA
AGAGTATAATTTGGTTAGAAATAATGTCTGA

Translation (406 aa):
MITMLQDLHVNKISMSRSKSETSLPSSRSGSQEKIMNVKGKVILLMLIVSTVVVVFWEYVNSPEGSFLWI
YHTKIPEVGENRWQKDWWFPSWFKNGTHSYQEDNVEGRREKGRNGDRIEEPQLWDWFNPKNRPDVLTVTP
WKAPIVWEGTYDTALLEKYYATQKLTVGLTVFAVGKYIEHYLEDFLESADMYFMVGHRVIFYVMIDDTSR
MPVVHLNPLHSLQVFEIRSEKRWQDISMMRMKTIGEHILAHIQHEVDFLFCMDVDQVFQDNFGVETLGQL
VAQLQAWWYKASPEKFTYERRELSAAYIPFGEGDFYYHAAIFGGTPTHILNLTRECFKGILQDKKHDIEA
QWHDESHLNKYFLFNKPTKILSPEYCWDYQIGLPSDIKSVKVAWQTKEYNLVRNNV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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