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Report for CCDS46214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46214.1 Public Homo sapiens 19 ZSCAN18 24 110 108 CCDS HistoryNCBI Gene:65982Re-query CCDS DB by CCDS ID:46214.1Re-query CCDS DB by GeneID:65982See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000600404.1 ENSP00000470123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600404.1Link to Ensembl Protein Viewer:ENSP00000470123.1Re-query CCDS DB by Nucleotide ID:ENST00000600404Re-query CCDS DB by Protein ID:ENSP00000470123
Original member Current member NCBI NM_001145542.1 NP_001139014.1 Accepted alive Link to Nucleotide Sequence:NM_001145542.1Link to Protein Sequence:NP_001139014.1Re-query CCDS DB by Nucleotide ID:NM_001145542Re-query CCDS DB by Protein ID:NP_001139014Link to BLAST:NP_001139014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139014.1 566 Q8TBC5-3 566 100% 0 0

Chromosomal Locations for CCDS 46214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58084685 58085379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086174 58086266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58086906 58087008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58087316 58087404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58088688 58088837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58089865 58090386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58118348 58118396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGCGGAGAGTCGGAGGGCGAGCTGACGAGGACGCTACGGCGGCGGGAAGTCTGTGGGTTCTGGCACCAC
CTGAGCCCACTGGGCATCTGGTCATCCCTGGCACCTCTCCTTTGGAGCCACCTTGTCCCTGGCTAGACAG
TCACATTTTCCAGTGCCGTTTTGGAAAGATGTTGCCTTTGGAGAAGGCGTTTGCCTCCCCCAGGAGCTCC
CCAGCCCCGCCGGATCTGCCCACGCCGGGGTCAGCAGCCGGAGTCCAGCAGGAAGAACCCGAGACCATCC
CTGAGAGGACCCCTGCTGACCTGGAGTTCTCCCGCCTGCGTTTCCGGGAATTTGTCTACCAGGAGGCTGC
CGGGCCCCACCAGACCCTGGCCCGGCTGCATGAGCTGTGCCGCCAGTGGCTGATGCCTGAGGCGCGCTCC
AAGGAGCAGATGCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGCATCCTGCCTGATAAGGTCCGGCCCT
GGGTGGTGGCACAGTACCCTGAGAGCTGCAAGAAGGCAGCCTCCCTGGTGGAGGGCCTCGCTGATGTCCT
GGAAGAGCCAGGGATGCTGCTGGGCTCCCCTGCGGGCTCATCCTCAATTCTTAGCGATGGAGTGTACGAG
AGGCACATGGACCCTCTGCTGCTACCAGGCGAGCTCGCGAGCCCCAGCCAGGCCCTTGGAGCTGGGGAGA
TCCCGGCACCTTCTGAGACACCCTGGCTTTCTCCGGACCCCCTGTTTCTGGAACAGAGGAGGGTCAGAGA
AGCAAAGACCGAAGAGGACGGCCCTGCCAACACCGAGCAGAAGCTGAAGTCCTTTCCAGAGGACCCTCAG
CACCTGGGGGAGTGGGGCCACCTGGACCCTGCCGAGGAGAACCTGAAGAGCTACCGGAAGCTGCTCCTGT
GGGGGTATCAGCTTTCCCAGCCTGACGCTGCCTCCAGGCTGGACACTGAGGAACTCCGGTTGGTGGAAAG
AGATCCACAAGGAAGCAGCCTCCCAGAAGGCGGGAGGCGGCAGGAGAGCGCTGGGTGCGCCTGCGAGGAG
GCCGCCCCCGCGGGGGTGCTGCCTGAGCTGCCTACGGAGGCGCCCCCTGGGGACGCCCTTGCCGATCCCC
CGTCGGGCACCACTGAGGAGGAGGAAGAGCAGCCTGGGAAGGCCCCGGACCCGCAGGACCCCCAGGACGC
GGAGTCCGACTCTGCCACCGGATCGCAGAGGCAGTCCGTCATCCAGCAGCCTGCCCCGGACAGGGGCACG
GCGAAACTGGGAACCAAGAGGCCGCACCCCGAGGATGGGGACGGGCAGAGCCTCGAGGGCGTCTCTAGCT
CCGGCGACAGCGCAGGGCTGGAGGCCGGGCAGGGCCCTGGGGCTGACGAGCCGGGCTTGTCCCGCGGGAA
GCCCTATGCCTGCGGCGAGTGCGGGGAGGCCTTCGCGTGGCTCTCGCACCTGATGGAGCACCACAGCAGC
CATGGCGGCCGGAAGCGCTACGCCTGTCAGGGCTGCTGGAAGACCTTCCACTTCAGCCTGGCCCTAGCCG
AGCACCAGAAGACCCACGAGAAGGAGAAAAGCTACGCGCTGGGGGGCGCCCGGGGCCCCCAACCGTCCAC
CCGCGAAGCCCAGGCGGGGGCTAGGGCGGGCGGTCCCCCAGAGAGCGTGGAGGGCGAGGCTCCCCCCGCA
CCCCCAGAGGCGCAGAGGTGA

Translation (566 aa):
MRRVGGRADEDATAAGSLWVLAPPEPTGHLVIPGTSPLEPPCPWLDSHIFQCRFGKMLPLEKAFASPRSS
PAPPDLPTPGSAAGVQQEEPETIPERTPADLEFSRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARS
KEQMLELLVLEQFLGILPDKVRPWVVAQYPESCKKAASLVEGLADVLEEPGMLLGSPAGSSSILSDGVYE
RHMDPLLLPGELASPSQALGAGEIPAPSETPWLSPDPLFLEQRRVREAKTEEDGPANTEQKLKSFPEDPQ
HLGEWGHLDPAEENLKSYRKLLLWGYQLSQPDAASRLDTEELRLVERDPQGSSLPEGGRRQESAGCACEE
AAPAGVLPELPTEAPPGDALADPPSGTTEEEEEQPGKAPDPQDPQDAESDSATGSQRQSVIQQPAPDRGT
AKLGTKRPHPEDGDGQSLEGVSSSGDSAGLEAGQGPGADEPGLSRGKPYACGECGEAFAWLSHLMEHHSS
HGGRKRYACQGCWKTFHFSLALAEHQKTHEKEKSYALGGARGPQPSTREAQAGARAGGPPESVEGEAPPA
PPEAQR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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