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Report for CCDS31897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31897.1 Public Homo sapiens 12 ALKBH2 24 110 108 CCDS HistoryNCBI Gene:121642Re-query CCDS DB by CCDS ID:31897.1Re-query CCDS DB by GeneID:121642See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31897.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343075.7 ENSP00000343021.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343075.7Link to Ensembl Protein Viewer:ENSP00000343021.3Re-query CCDS DB by Nucleotide ID:ENST00000343075Re-query CCDS DB by Protein ID:ENSP00000343021
Original member Current member EBI ENST00000429722.3 ENSP00000398181.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000429722.3Link to Ensembl Protein Viewer:ENSP00000398181.1Re-query CCDS DB by Nucleotide ID:ENST00000429722Re-query CCDS DB by Protein ID:ENSP00000398181
Original member Current member NCBI NM_001001655.3 NP_001001655.1 Accepted alive Link to Nucleotide Sequence:NM_001001655.3Link to Protein Sequence:NP_001001655.1Re-query CCDS DB by Nucleotide ID:NM_001001655Re-query CCDS DB by Protein ID:NP_001001655Link to BLAST:NP_001001655.1
Original member Current member NCBI NM_001145374.2 NP_001138846.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145374.2Link to Protein Sequence:NP_001138846.1Re-query CCDS DB by Nucleotide ID:NM_001145374Re-query CCDS DB by Protein ID:NP_001138846Link to BLAST:NP_001138846.1
Original member Current member NCBI NM_001145375.2 NP_001138847.1 Accepted alive Link to Nucleotide Sequence:NM_001145375.2Link to Protein Sequence:NP_001138847.1Re-query CCDS DB by Nucleotide ID:NM_001145375Re-query CCDS DB by Protein ID:NP_001138847Link to BLAST:NP_001138847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001655.1 261 Q6NS38-1 261 100% 0 0
NP_001138846.1 261 Q6NS38-1 261 100% 0 0
NP_001138847.1 261 Q6NS38-1 261 100% 0 0

Chromosomal Locations for CCDS 31897.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 109088206 109088512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109090009 109090207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 109092507 109092786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGACAGATTCCTGGTGAAAGGGGCTCAAGGGGGCCTTTTGAGGAAGCAGGAGGAGCAAGAGCCAACTG
GAGAAGAGCCAGCTGTGTTGGGAGGAGACAAAGAAAGCACAAGGAAGAGGCCCAGGAGAGAGGCCCCAGG
GAATGGAGGCCACTCAGCAGGCCCTAGCTGGCGGCACATTCGGGCTGAGGGCCTGGACTGCAGTTACACA
GTCCTGTTTGGCAAAGCTGAGGCAGATGAGATTTTCCAAGAGTTGGAGAAAGAAGTAGAATATTTTACAG
GAGCACTGGCCAGAGTCCAGGTATTCGGGAAGTGGCACAGTGTGCCCAGGAAGCAGGCAACGTATGGCGA
CGCTGGGCTGACCTACACATTTTCAGGCCTCACGCTGTCTCCAAAGCCCTGGATCCCAGTTCTAGAGCGC
ATCCGGGATCACGTCTCTGGGGTGACTGGACAGACCTTCAACTTTGTGCTCATCAACAGGTATAAAGATG
GCTGTGACCACATCGGGGAGCACCGAGATGATGAAAGAGAACTGGCCCCTGGGAGCCCCATTGCCTCTGT
CTCCTTCGGTGCCTGCAGAGACTTTGTCTTCCGGCATAAGGATTCCCGTGGGAAAAGCCCCTCCAGGAGG
GTGGCGGTGGTCAGGCTGCCGCTGGCCCACGGGAGCTTACTAATGATGAACCACCCGACCAACACGCACT
GGTACCACAGTCTTCCCGTGAGAAAGAAGGTTCTGGCTCCACGGGTGAATCTGACTTTTCGTAAAATTTT
GCTTACTAAAAAATAA

Translation (261 aa):
MDRFLVKGAQGGLLRKQEEQEPTGEEPAVLGGDKESTRKRPRREAPGNGGHSAGPSWRHIRAEGLDCSYT
VLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWIPVLER
IRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRR
VAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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