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Report for CCDS83379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83379.1 Public Homo sapiens 9 SPATA31D4 24 110 108 CCDS HistoryNCBI Gene:389761Re-query CCDS DB by CCDS ID:83379.1Re-query CCDS DB by GeneID:389761See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419782.5 ENSP00000488251.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000419782.5Link to Ensembl Protein Viewer:ENSP00000488251.1Re-query CCDS DB by Nucleotide ID:ENST00000419782Re-query CCDS DB by Protein ID:ENSP00000488251
Original member Current member NCBI NM_001145197.1 NP_001138669.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145197.1Link to Protein Sequence:NP_001138669.1Re-query CCDS DB by Nucleotide ID:NM_001145197Re-query CCDS DB by Protein ID:NP_001138669Link to BLAST:NP_001138669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138669.1 917 Q6ZUB0 917 100% 0 0

Chromosomal Locations for CCDS 83379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 81928514 81928699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81929456 81929501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81930100 81930160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 81930455 81932915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGAGAATATCCTCTGTTTTCTGAACAGCTATACTGAGACAGGGCTGAGCCCTGACTCACATTGTTTGG
ATATTGACCTCAACTTCATCTGCTTGAGTGGGTTGGGGTTGTTTATACTGTACTTGTTCTACATGGTATT
GACCCTGTATTCATCACCCACCGAAAAAAATAATGACACCCAAAAGCATCAGGGCAGAGCCAGGAGGAAA
AGAAAAAGCGTGACATTTAAAGACCGGAAAAGTTTGCAGAAGGAAGCAGAAGAGGAAAGAAAGCTACATT
CTTTTCTGAAAAGCTTTGGACCTCCTGTTTCCTGCAGTCCCCTGGGCCAGCATCATGATACCACCCTCTT
TCGTCGACTGTTATGCCCAGACCCTGTCTGTCGGGTGTGTAACAGAGCAACTGCTGATATCCAGCGACTG
CTGTCTTGGGAGTCCCTGAAAGATGCTGCTCCCTCTGTGTCCCCTTTGGCTTCTTCAGCTTCTGGGGCTG
AGTCATCGTTCACTCTGGCTTCCACCCCCTCAGCAACCACTCCAGAAGACCTAATATTGTCCTCTCGGCC
TAAGCCCTCTCCACCACCCCCCTTAATTCTCTCACCTGACCTGATCACCACCTTAGCTGACTTATTTTCA
CCCTCACCACTGAGGGACCCTCTGCCACCACAGCCTGTTTCTCCCTTGGATTCCAAGTTCCCCATAGACC
ATTCCCCACCCCAACAGCTTCCCTTTCCCCTTCTCCCACCACATCACATTGAGAGAGTGGAGCCCAGCCT
CCAACCTGAGGCCAGTTTGTCTCTGAACACCATCTTTTCATTTGGCTCCACCCTATGCCAAGATATTTCC
CAGGCCGTGAATCGCACTGATTCATGTGCTCGTCATCATGGACCACCAACCCCATCTGCTTTACCACCGG
AAGATTGCACTGTGACTCAGTCTAAATCAAATCTCACCGTCTTGAAGACTTTTCCGGAAATGTTATCTCT
AGGTGGCTCTGGTGGGTCATCCACCTCTGCCCCAACAACGAAAGGCATTGACCATTCATGCCCTGCATCT
TCAGAATTCTCCTGGTGGCAGCCTCATGCCAAGGACTCTTTTTCCTCTAATTTTGTGCCATCTGATTTCA
TGGAGGAGCTTCTTACCCTTCATTCTTCTGAGGCCTCTTTAGGGGGGCACTCTGTGGCCAACATCATACA
GCCTGTTAACATCTCTTTTCTCAGCCATGACATTCCGGCACTCCTGGAGAGACAAGTCAAAAGAAGGGGT
GATTTCCTGATGTGGAAAGAAAATGGAAAGAAACCAGGATCATTCCCAACACAACTTAGGCCAAACTACC
AACTAAATTCCTCACGGAATATGTTAACCTCAACTGCTGTTAAGCATGACTTAGCAGAATCCTTTCCTTT
TTGGGCCAGTAAAGGCAAACTAGAGTGGCAGCACATCCATCAGCAGCCCCCATATTCTAAGTGTTTTGAG
GACCATTTAGAGCAAAAATATGTCCAGCTCTTCTGGGGTCTCCCATCTTTGCACAGCGAGTCTCTGCATC
CTACTGTTTTTGTCCAACATGGCCGTTCCTCCATGTTTGTATTCTTCAATGGCATTACAAATACATCTAT
GTCCCATGAATCCCCAGTACTTCCCCCTCCCCAACCTCTGTTCTTGCCTAGTACCCAACCTCTACCCTTG
CCTCAAACCCTGCCCCGAGGTCAGTCCCTACATCTCACTCAGGTGAAGTCCCTGGCTCAACCTCAATCTC
CATTCCCAGCCCTACCACCTAGTCCTCTATTCCTGATTAGGGTGTGTGGCGTGTGTTTTCATAGACCCCA
GAATGAGGCACGGTCTCTTATGCCATCTGAAATTAATCATCTGGAGTGGAACGTGTTGCAGAAAGTGCAG
GAAAGTGTGTGGGGTTTACCCTCTGTGGTTCAAAAATCCCAGGAAGACTTTTGTCCTCCAGCTCCCAATC
CTGTATTGGTCAGAAAGTCCTTCAAGGTCCATGTTCCCATCTCCATCATTCCTGGAGATTTTCCACTCAG
CTCTGAGGTAAGGAAGAAACTAGAGCAACACATTCGAAAGAGGCTCATCCAGCGCAGATGGGGCCTGCCC
CGCAGAATCCATGAGTCTCTGTCATTGCTACGTCCTCAGAACAAAATTTCAGAGCTATCTGTGTCAGAGA
GCATTCATGGTCCATTAAATATCTCTTTGGTTGAGGGTCAGAGGTGCAATGTTCTAAAGAAGTCCGCATC
AAGCTTCCCTAGAAGCTTCCACGAGAGGAGCTCAAATATGCTTTCCATGGAGAATGTGGGGAATTATCAG
GGATGCAGCCAGGAGACTGCCCCAAAAAACCATCTCTTGCATGATCCGGAGACATCTTCAGACGAGGATC
TGAGGTCTAACTCTGAGAGAGACCTAGGAACTCATATGATGCATCTGTCAGGGAATGATTCAGGGGTGAG
ACTAGGTCAGAAACAACTTGAAAATGCCCTGACAGTACATTTGAGCAAGAAATTTGAGGAAATCAATGAG
GGTCGAATGCCTGGGACTGTGCATAGTTCATGGCACTCAGTCAAGCAGACAATATGTCTTCCTGAGAAAT
CCCACAGCCAAATTAAACATCGAAATTTGGCAGCATTGGTGAGTGAGGACCACGGCGTTGATACCTCCCA
GGAGATGTCCTTCCTTAGTTCCAACAAACAAAAGATGTTGGAAGCCCATATTAAATCTTTCCATATGAAG
CCCATATTAAATCTTTCCATATGA

Translation (917 aa):
MENILCFLNSYTETGLSPDSHCLDIDLNFICLSGLGLFILYLFYMVLTLYSSPTEKNNDTQKHQGRARRK
RKSVTFKDRKSLQKEAEEERKLHSFLKSFGPPVSCSPLGQHHDTTLFRRLLCPDPVCRVCNRATADIQRL
LSWESLKDAAPSVSPLASSASGAESSFTLASTPSATTPEDLILSSRPKPSPPPPLILSPDLITTLADLFS
PSPLRDPLPPQPVSPLDSKFPIDHSPPQQLPFPLLPPHHIERVEPSLQPEASLSLNTIFSFGSTLCQDIS
QAVNRTDSCARHHGPPTPSALPPEDCTVTQSKSNLTVLKTFPEMLSLGGSGGSSTSAPTTKGIDHSCPAS
SEFSWWQPHAKDSFSSNFVPSDFMEELLTLHSSEASLGGHSVANIIQPVNISFLSHDIPALLERQVKRRG
DFLMWKENGKKPGSFPTQLRPNYQLNSSRNMLTSTAVKHDLAESFPFWASKGKLEWQHIHQQPPYSKCFE
DHLEQKYVQLFWGLPSLHSESLHPTVFVQHGRSSMFVFFNGITNTSMSHESPVLPPPQPLFLPSTQPLPL
PQTLPRGQSLHLTQVKSLAQPQSPFPALPPSPLFLIRVCGVCFHRPQNEARSLMPSEINHLEWNVLQKVQ
ESVWGLPSVVQKSQEDFCPPAPNPVLVRKSFKVHVPISIIPGDFPLSSEVRKKLEQHIRKRLIQRRWGLP
RRIHESLSLLRPQNKISELSVSESIHGPLNISLVEGQRCNVLKKSASSFPRSFHERSSNMLSMENVGNYQ
GCSQETAPKNHLLHDPETSSDEDLRSNSERDLGTHMMHLSGNDSGVRLGQKQLENALTVHLSKKFEEINE
GRMPGTVHSSWHSVKQTICLPEKSHSQIKHRNLAALVSEDHGVDTSQEMSFLSSNKQKMLEAHIKSFHMK
PILNLSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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