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Report for CCDS15049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15049.1 Public Mus musculus 1 Vil1 23 108 98 CCDS HistoryNCBI Gene:22349Re-query CCDS DB by CCDS ID:15049.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027366.12 ENSMUSP00000027366.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027366.12Link to Ensembl Protein Viewer:ENSMUSP00000027366.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027366Re-query CCDS DB by Protein ID:ENSMUSP00000027366
Original member Current member NCBI NM_009509.2 NP_033535.2 Accepted alive Link to Nucleotide Sequence:NM_009509.2Link to Protein Sequence:NP_033535.2Re-query CCDS DB by Nucleotide ID:NM_009509Re-query CCDS DB by Protein ID:NP_033535Link to BLAST:NP_033535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033535.2 827 Q62468 827 100% 0 0

Chromosomal Locations for CCDS 15049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74415080 74415154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74415966 74416040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74418360 74418556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74419569 74419677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74419795 74419905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74421253 74421455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74421561 74421639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74421779 74421877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74422927 74423080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74423675 74423775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74423863 74424000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74425537 74425695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74426552 74426731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74427240 74427385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74427479 74427623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74428067 74428255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74430617 74430685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74432291 74432431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74434878 74434991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGACTAAACTGAATGCCCAAGTCAAAGGCTCTCTCAACATCACCACTCCCGGGATACAGATATGGAGGA
TCGAGGCTATGCAGATGGTACCTGTTCCTTCCAGCACCTTTGGAAGCTTCTTCGATGGTGACTGCTATGT
AGTCCTGGCTATCCACAAGACCAGCAGCACTCTCTCCTATGATATCCACTACTGGATTGGCCAGGACTCG
TCCCAGGATGAGCAGGGGGCAGCTGCCATCTACACCACACAGATGGATGACTACCTGAAGGGCCGGGCTG
TCCAGCACCGCGAGGTTCAAGGCAACGAGAGCGAGACTTTCCGGAGCTACTTCAAGCAAGGCCTTGTGAT
CCGGAAAGGGGGAGTGGCTTCCGGCATGAAGCACGTAGAAACAAACTCCTGTGATGTCCAGCGACTGTTG
CACGTCAAGGGCAAGAGGAATGTGCTGGCTGGAGAGGTGGAAATGTCCTGGAAGAGTTTCAACAGAGGGG
ATGTCTTCCTGCTGGACCTTGGGAAGCTTATTATCCAGTGGAATGGGCCAGAGAGTAACCGCATGGAGAG
ACTTCGGGGCATGGCCTTGGCCAAAGAGATCCGAGACCAGGAACGGGGTGGACGTACCTACGTAGGTGTG
GTGGACGGGGAGAAGGAAGGGGACTCCCCACAGCTGATGGCAATTATGAACCACGTGCTGGGCCCACGCA
AAGAACTGAAGGCTGCTATTTCTGACTCAGTGGTGGAGCCGGCCGCTAAGGCTGCACTCAAGCTGTACCA
TGTGTCTGACTCCGAAGGAAAACTGGTGGTTAGAGAAGTTGCTACTCGGCCACTCACACAAGACCTGCTC
AAGCATGAGGACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCA
ACGCTCAGGAGAGGAGCGGAGCCATGAGCCAGGCCTTGAACTTCATCAAAGCCAAGCAGTACCCACCGAG
CACGCAGGTTGAGGTGCAGAATGACGGGGCCGAGTCCCCCATCTTCCAACAACTCTTCCAGAAGTGGACA
GTGCCCAACCGGACCTCAGGCCTCGGCAAAACCCACACTGTGGGCTCTGTGGCTAAGGTGGAACAGGTGA
AGTTTGATGCTCTGACCATGCATGTACAACCTCAGGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAG
TGGGGAAGTGCAGGTGTGGCGCATCGAGGACTTGGAGCTGGTGCCTGTGGAGTCCAAGTGGCTGGGCCAT
TTCTACGGTGGTGACTGCTACCTGCTGCTCTACACCTACCTCATAGGGGAAAAGCAACACTACTTGTTAT
ATATCTGGCAGGGCAGCCAGGCCAGCCAGGATGAAATTGCAGCCTCGGCGTATCAAGCCGTCCTGTTGGA
CCAGAAGTACAATGACGAGCCAGTACAGATCCGGGTCACGATGGGCAAGGAGCCGCCTCACCTCATGTCT
ATCTTCAAGGGCCGCATGGTGGTTTATCAGGGAGGCACCTCCCGAAAGAACAACTTGGAGCCTGTGCCCT
CTACGAGGCTATTTCAGGTCCGAGGGACCAATGCTGATAACACCAAGGCTTTTGAGGTGACAGCCCGGGC
CACGTCCCTCAACTCCAATGATGTCTTCATACTCAAGACTCCGTCCTGCTGCTACCTGTGGTGTGGGAAG
GGCTGCAGTGGGGATGAGAGGGAGATGGCCAAGATGGTTGCTGATACCATCTCTCGGACGGAGAAACAAG
TGGTAGTAGAGGGGCAGGAGCCAGCCAACTTCTGGATGGCTCTGGGCGGGAAGGCGCCCTACGCCAACAC
CAAGAGGCTGCAGGAGGAAAACCAAGTCATCACTCCTCGGCTCTTCGAGTGCTCCAACCAGACCGGACGC
TTTCTGGCCACAGAGATCTTTGACTTCAATCAGGATGACCTGGAGGAGGAGGATGTGTTCCTATTGGATG
TCTGGGACCAGGTCTTCTTCTGGATAGGGAAACATGCCAATGAGGAAGAGAAGAAGGCTGCAGCTACAAC
TGTACAAGAATACCTCAAGACCCACCCTGGAAACCGAGACCTTGAGACCCCTATCATCGTGGTGAAGCAG
GGACACGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGTAACACCAAAT
CCTATGATGACCTTAAGGCAGAGCTGGGAAACTCTGGGGACTGGAGCCAGATTGCTGACGAGGTTATGAG
CCCGAAAGTGGACGTTTTCACTGCCAATACCAGTCTGAGTTCTGGGCCCCTGCCCACCTTCCCCCTGGAG
CAGCTGGTAAACAAGTCTGTAGAGGATCTCCCTGAGGGTGTGGACCCCAGCAGGAAGGAGGAGCACCTGT
CCACCGAAGACTTCACTAGGGCCTTGGGCATGACTCCAGCTGCCTTCTCTGCCCTGCCTCGATGGAAGCA
ACAAAACATCAAGAAAGAAAAAGGACTGTTTTGA

Translation (827 aa):
MTKLNAQVKGSLNITTPGIQIWRIEAMQMVPVPSSTFGSFFDGDCYVVLAIHKTSSTLSYDIHYWIGQDS
SQDEQGAAAIYTTQMDDYLKGRAVQHREVQGNESETFRSYFKQGLVIRKGGVASGMKHVETNSCDVQRLL
HVKGKRNVLAGEVEMSWKSFNRGDVFLLDLGKLIIQWNGPESNRMERLRGMALAKEIRDQERGGRTYVGV
VDGEKEGDSPQLMAIMNHVLGPRKELKAAISDSVVEPAAKAALKLYHVSDSEGKLVVREVATRPLTQDLL
KHEDCYILDQGGLKIFVWKGKNANAQERSGAMSQALNFIKAKQYPPSTQVEVQNDGAESPIFQQLFQKWT
VPNRTSGLGKTHTVGSVAKVEQVKFDALTMHVQPQVAAQQKMVDDGSGEVQVWRIEDLELVPVESKWLGH
FYGGDCYLLLYTYLIGEKQHYLLYIWQGSQASQDEIAASAYQAVLLDQKYNDEPVQIRVTMGKEPPHLMS
IFKGRMVVYQGGTSRKNNLEPVPSTRLFQVRGTNADNTKAFEVTARATSLNSNDVFILKTPSCCYLWCGK
GCSGDEREMAKMVADTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENQVITPRLFECSNQTGR
FLATEIFDFNQDDLEEEDVFLLDVWDQVFFWIGKHANEEEKKAAATTVQEYLKTHPGNRDLETPIIVVKQ
GHEPPTFTGWFLAWDPFKWSNTKSYDDLKAELGNSGDWSQIADEVMSPKVDVFTANTSLSSGPLPTFPLE
QLVNKSVEDLPEGVDPSRKEEHLSTEDFTRALGMTPAAFSALPRWKQQNIKKEKGLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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