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Report for CCDS10325.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10325.2 Public Homo sapiens 15 SH3GL3 24 110 108 CCDS HistoryNCBI Gene:6457Re-query CCDS DB by CCDS ID:10325.2Re-query CCDS DB by GeneID:6457See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 10325.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and protein data. The update extends the BAR domain in the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10325.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427482.7 ENSP00000391372.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000427482.7Link to Ensembl Protein Viewer:ENSP00000391372.2Re-query CCDS DB by Nucleotide ID:ENST00000427482Re-query CCDS DB by Protein ID:ENSP00000391372
Original member Current member NCBI NM_003027.5 NP_003018.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003027.5Link to Protein Sequence:NP_003018.3Re-query CCDS DB by Nucleotide ID:NM_003027Re-query CCDS DB by Protein ID:NP_003018Link to BLAST:NP_003018.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003018.3 347 Q99963-1 347 100% 0 0

Chromosomal Locations for CCDS 10325.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83447534 83447578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83559253 83559321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83565134 83565206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83568529 83568672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83572565 83572698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83576583 83576741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83586983 83587086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83588662 83588771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83618082 83618287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGTCGGTGGCCGGGCTGAAGAAGCAGTTCCACAAAGCCAGCCAGCTATTTAGTGAAAAAATAAGTGGTG
CTGAAGGAACTAAACTAGACGATGAATTTCTTGACATGGAAAGGAAAATAGATGTTACCAATAAAGTTGT
TGCAGAAATTCTTTCAAAAACCACTGAATATCTTCAGCCAAATCCAGCATACAGAGCTAAGCTAGGAATG
CTGAACACTGTGTCGAAGATCCGAGGGCAGGTGAAGACCACAGGATACCCGCAGACGGAAGGCTTGCTGG
GGGACTGTATGCTGAAATACGGGAAGGAGCTCGGGGAAGACTCCACCTTTGGCAATGCATTGATAGAAGT
TGGTGAATCCATGAAGCTAATGGCTGAGGTGAAAGACTCTCTTGATATTAATGTAAAGCAAACTTTTATT
GATCCACTTCAGTTACTACAAGATAAAGATTTAAAAGAGATCGGGCATCACCTGAAAAAGCTGGAAGGCC
GCCGCCTGGATTACGATTATAAAAAGAAACGAGTAGGTAAGATACCAGACGAAGAAGTCAGACAAGCGGT
AGAAAAATTTGAAGAGTCAAAGGAGTTGGCTGAAAGAAGCATGTTTAACTTTTTAGAAAATGATGTAGAA
CAAGTCAGCCAGTTGGCTGTGTTCATAGAGGCAGCATTAGACTATCACAGACAGTCCACAGAGATTCTGC
AGGAGCTGCAGAGCAAGCTACAGATGCGAATATCAGCTGCATCCAGTGTCCCCAGACGAGAATACAAGCC
AAGGCCTGTGAAAAGGAGTTCTAGTGAGCTCAATGGAGTTTCCACCACCTCTGTAGTGAAGACGACAGGT
TCTAACATTCCCATGGACCAGCCCTGCTGTCGTGGTCTCTATGACTTTGAGCCAGAAAACCAAGGAGAAT
TAGGATTTAAAGAAGGGGACATCATTACATTAACCAATCAAATAGATGAAAACTGGTATGAAGGAATGAT
ACACGGAGAATCGGGATTCTTCCCCATTAATTACGTGGAAGTGATCGTGCCTTTACCTCAGTAA

Translation (347 aa):
MSVAGLKKQFHKASQLFSEKISGAEGTKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGM
LNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFI
DPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFLENDVE
QVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAASSVPRREYKPRPVKRSSSELNGVSTTSVVKTTG
SNIPMDQPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPLPQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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