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Report for CCDS17785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17785.1 Public Mus musculus 3 Vcam1 23 108 98 CCDS HistoryNCBI Gene:22329Re-query CCDS DB by CCDS ID:17785.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029574.12 ENSMUSP00000029574.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029574.12Link to Ensembl Protein Viewer:ENSMUSP00000029574.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029574Re-query CCDS DB by Protein ID:ENSMUSP00000029574
Original member Current member NCBI NM_011693.3 NP_035823.3 Accepted alive Link to Nucleotide Sequence:NM_011693.3Link to Protein Sequence:NP_035823.3Re-query CCDS DB by Nucleotide ID:NM_011693Re-query CCDS DB by Protein ID:NP_035823Link to BLAST:NP_035823.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035823.3 739 P29533-1 739 99.8647% 0 1

Chromosomal Locations for CCDS 17785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116110877 116111037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116114353 116114619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116115885 116116151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116117223 116117543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116120798 116121073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116124383 116124649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116125955 116126275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116128533 116128808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116129304 116129367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGCCTGTGAAGATGGTCGCGGTCTTGGGAGCCTCAACGGTACTTTGGATACTGTTTGCAGTCTCTCAAG
CTTTTAAAATCGAGATCTCCCCTGAATACAAAACGATTGCTCAAATCGGTGACTCCATGGCCCTCACTTG
CAGCACTACGGGCTGCGAGTCACCATTGTTCTCATGGAGAACCCAGATAGACAGCCCACTAAACGCGAAG
GTGAGGACGGAGGGGTCCAAGTCCGTTCTGACCATGGAGCCTGTCAGTTTTGAGAATGAACACTCTTACC
TGTGCACAGCAACATGTGGCTCTGGGAAGCTGGAACGAAGTATCCACGTGGACATCTACTCTTTCCCCAA
GGATCCAGAGATTCAATTCAGTGGCCCCCTGGAGGTTGGGAAGCCGGTCACGGTCAAGTGTTTGGCTCCA
GACATTTACCCAGTTTACAGGCTGGAGATTGATCTGTTCAAGGGTGACCAGCTCATGAACAGACAGGAGT
TTTCTTCAGAAGAGATGACAAAGTCTCTAGAAACCAAGAGTTTGGAAGTAACCTTTACTCCCGTCATTGA
GGATATTGGAAAAGCTCTTGTTTGCCGAGCTAAATTACACATTGACCAAATTGATTCTACACTCAAAGAA
AGGGAGACTGTCAAAGAACTACAAGTCTACATCTCTCCCAGGAATACAACGATCTCTGTACATCCCTCCA
CAAGGCTTCAAGAGGGTGGTGCTGTGACAATGACCTGTTCCAGCGAGGGTCTACCAGCTCCTGAGATTTT
CTGGGGCAGGAAGTTAGATAATGAAGTTCTCCAGCTTCTCTCAGGAAATGCCACCCTCACCTTAATTGCT
ATGAGGATGGAAGACTCTGGAGTCTATGTGTGTGAAGGAGTTAATCTGATTGGGAGAGACAAAGCAGAAG
TGGAATTAGTTGTTCAAGAGAAACCATTTATTGTTGACATCTCCCCCGGATCTCAGGTGGCTGCACAAGT
TGGGGATTCGGTTGTTCTGACGTGTGCTGCTATTGGCTGTGACTCCCCTTCTTTTTCTTGGAGAACCCAG
ACAGACAGTCCCCTCAATGGGGTGGTAAGGAATGAGGGGGCCAAATCCACGCTTGTGTTGAGCTCTGTGG
GTTTTGAGGATGAACACTCTTACCTGTGCGCTGTGACCTGTCTGCAAAGGACACTGGAAAAGAGAACCCA
GGTGGAGGTCTACTCATTCCCTGAAGATCCAGTAATTAAAATGAGTGGGCCACTTGTGCATGGGAGACCT
GTCACTGTCAACTGCACAGTCCCTAATGTGTATCCCTTTGACCATCTGGAGATTGAATTACTGAAGGGGG
AGACTACACTGATGAAGAAATATTTTTTGGAGGAAATGGGCATAAAGTCCCTAGAGACCAAAATTTTGGA
AACGACCTTCATCCCCACCATTGAAGATACCGGGAAATCTCTTGTTTGCCTCGCTAGGTTACACAGTGGT
GAAATGGAATCTGAACCCAAACAGAGGCAGAGTGTACAGCCTCTTTATGTCAACGTTGCCCCCAAGGAAA
CCACCATCTGGGTCAGCCCCTCTCCTATACTAGAGGAGGGCAGTCCTGTGAACCTGACCTGCTCAAGTGA
TGGGATACCAGCTCCCAAAATCCTGTGGAGCAGACAGCTAAATAATGGGGAACTGCAGCCTCTTTCTGAA
AATACTACACTCACCTTCATGTCTACAAAAAGGGACGATTCCGGCATTTATGTGTGTGAAGGGATTAACG
AGGCTGGAATTAGCAGAAAATCAGTTGAACTGATTATCCAAGTCTCTCCAAAAGATATACAGCTTACAGT
CTTTCCATCTAAGAGTGTCAAAGAGGGAGACACCGTCATTATCTCCTGCACTTGTGGAAATGTGCCCGAA
ACATGGATAATCCTGAAGAAGAAAGCAAAGACAGGAGACATGGTATTAAAGTCTGTGGATGGCTCGTACA
CCATCCGCCAGGCACAGCTGCAGGATGCCGGCATATACGAGTGTGAATCTAAGACTGAAGTTGGCTCACA
ATTAAGAAGTTTAACACTTGATGTAAAAGGAAAAGAACATAACAAGAACTATTTTTCGCCCGAACTCCTT
GCACTCTACTGCGCATCTTCCTTGGTAATACCTGCCATCGGGATGATCGTTTATTTTGCAAGAAAAGCTA
ACATGAAAGGATCGTACAGTCTGGTGGAGGCACAGAAATCCAAAGTGTAG

Translation (739 aa):
MPVKMVAVLGASTVLWILFAVSQAFKIEISPEYKTIAQIGDSMALTCSTTGCESPLFSWRTQIDSPLNAK
VRTEGSKSVLTMEPVSFENEHSYLCTATCGSGKLERSIHVDIYSFPKDPEIQFSGPLEVGKPVTVKCLAP
DIYPVYRLEIDLFKGDQLMNRQEFSSEEMTKSLETKSLEVTFTPVIEDIGKALVCRAKLHIDQIDSTLKE
RETVKELQVYISPRNTTISVHPSTRLQEGGAVTMTCSSEGLPAPEIFWGRKLDNEVLQLLSGNATLTLIA
MRMEDSGVYVCEGVNLIGRDKAEVELVVQEKPFIVDISPGSQVAAQVGDSVVLTCAAIGCDSPSFSWRTQ
TDSPLNGVVRNEGAKSTLVLSSVGFEDEHSYLCAVTCLQRTLEKRTQVEVYSFPEDPVIKMSGPLVHGRP
VTVNCTVPNVYPFDHLEIELLKGETTLMKKYFLEEMGIKSLETKILETTFIPTIEDTGKSLVCLARLHSG
EMESEPKQRQSVQPLYVNVAPKETTIWVSPSPILEEGSPVNLTCSSDGIPAPKILWSRQLNNGELQPLSE
NTTLTFMSTKRDDSGIYVCEGINEAGISRKSVELIIQVSPKDIQLTVFPSKSVKEGDTVIISCTCGNVPE
TWIILKKKAKTGDMVLKSVDGSYTIRQAQLQDAGIYECESKTEVGSQLRSLTLDVKGKEHNKNYFSPELL
ALYCASSLVIPAIGMIVYFARKANMKGSYSLVEAQKSKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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