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Report for CCDS27382.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27382.1 Public Mus musculus 15 Slc45a2 23 108 98 CCDS HistoryNCBI Gene:22293Re-query CCDS DB by CCDS ID:27382.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27382.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117100.3 ENSMUSP00000112408.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117100.3Link to Ensembl Protein Viewer:ENSMUSP00000112408.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000117100Re-query CCDS DB by Protein ID:ENSMUSP00000112408
Original member Current member NCBI NM_053077.3 NP_444307.1 Accepted alive Link to Nucleotide Sequence:NM_053077.3Link to Protein Sequence:NP_444307.1Re-query CCDS DB by Nucleotide ID:NM_053077Re-query CCDS DB by Protein ID:NP_444307Link to BLAST:NP_444307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444307.1 530 P58355 530 100% 0 0

Chromosomal Locations for CCDS 27382.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 11000817 11001201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11002828 11003004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11012475 11012800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11022062 11022205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11023344 11023467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11025722 11025933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11027715 11027939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGAGTGGAAGCAATGGGCCGACTGACACCCATACCTATCAATCCTTAGCCGAGGATTGCCCCTTTGGCT
CTGTGGAGCAACCCAAGAGATCCACAGGGAGACTTGTCATGCACAGCATGGCCATGTTTGGCCGAGAGTT
TTGCTATGCGGTGGAGGCAGCTTATGTGACTCCAGTTCTGCTCAGCGTGGGCCTGCCTAAGAGCCTGTAC
AGCATGGTGTGGCTCCTAAGCCCCATCTTGGGATTCCTGCTCCAGCCTGTGGTGGGATCAGCCAGTGATC
ACTGCAGGGCCCGTTGGGGTCGCCGGAGACCATACATCCTGACTCTGGCCATTATGATGCTCTTGGGAAT
GGCTCTGTACCTCAATGGAGATGCGGTCGTATCAGCTTTGGTTGCTAACCCAAGGCAGAAGCTGATCTGG
GCCATAAGCATCACCATGGTAGGTGTGGTTCTCTTCGATTTTTCTGCTGACTTCATTGACGGGCCCATCA
AAGCCTACTTATTTGATGTCTGCTCCCACCAGGACAAGGAGAAGGGCCTCCACTACCATGCCCTCTTCAC
AGGTTTTGGAGGTGCCCTTGGCTACATTTTGGGTGCCATAGACTGGGTGCATCTAGATCTGGGAAGGCTG
CTGGGCACAGAATTCCAGGTCATGTTCTTCTTCTCTGCCCTGGTTCTCATCTTGTGCTTCATCACACACC
TGTGCAGTATCCCTGAAGCTCCACTCAGAGATGCTGCAACTGACCCTCCCTCACAGCAGGACCCTCAGGG
CTCGTCGCTGTCAGCCAGTGGGATGCATGAATACGGTTCTATTGAGAAAGTTAAAAATGGAGGTGCAGAC
ACAGAGCAGCCAGTACAGGAATGGAAAAACAAAAAGCCTTCTGGCCAGAGTCAGAGGACAATGTCGATGA
AGTCACTCCTTCGGGCATTAGTAAACATGCCTTCCCATTATCGCTGCCTTTGCGTCAGCCACCTGATTGG
ATGGACTGCCTTCCTGTCAAACATGCTCTTCTTCACAGATTTCATGGGACAGATTGTATACCATGGGGAT
CCCTACGGTGCACACAACTCCACGGAGTTTCTCATCTATGAAAGAGGAGTTGAGGTCGGATGTTGGGGCT
TGTGCATCAACTCTGTGTTTTCTTCAGTTTATTCATACTTTCAGAAAGCTATGGTCTCCTACATTGGATT
AAAAGGCCTTTATTTCATGGGATATTTGCTCTTTGGCCTGGGAACAGGATTCATAGGACTCTTTCCAAAT
GTGTACTCTACTCTGGTCCTCTGTTCTATGTTTGGTGTAATGTCCAGCACATTGTACACTGTGCCCTTTA
ACCTCATTGCTGAGTACCACCGTGAAGAGGAGAAAGAGAAGGGGCAGGAAGCGCCAGGAGGCCCTGACAA
CCAGGGGAGAGGCAAAGGCGTGGACTGCGCTGCTCTCACCTGCATGGTACAGCTGGCTCAGATCTTGGTT
GGAGGTGGCCTGGGCTTCCTGGTCAACATGGCTGGGAGTGTCGTCGTCGTGGTGATCACAGCGTCTGCGG
TGTCCCTGATAGGCTGTTGCTTTGTGGCGCTCTTCGTAAGATATGTAGATTAG

Translation (530 aa):
MSGSNGPTDTHTYQSLAEDCPFGSVEQPKRSTGRLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLY
SMVWLLSPILGFLLQPVVGSASDHCRARWGRRRPYILTLAIMMLLGMALYLNGDAVVSALVANPRQKLIW
AISITMVGVVLFDFSADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYILGAIDWVHLDLGRL
LGTEFQVMFFFSALVLILCFITHLCSIPEAPLRDAATDPPSQQDPQGSSLSASGMHEYGSIEKVKNGGAD
TEQPVQEWKNKKPSGQSQRTMSMKSLLRALVNMPSHYRCLCVSHLIGWTAFLSNMLFFTDFMGQIVYHGD
PYGAHNSTEFLIYERGVEVGCWGLCINSVFSSVYSYFQKAMVSYIGLKGLYFMGYLLFGLGTGFIGLFPN
VYSTLVLCSMFGVMSSTLYTVPFNLIAEYHREEEKEKGQEAPGGPDNQGRGKGVDCAALTCMVQLAQILV
GGGLGFLVNMAGSVVVVVITASAVSLIGCCFVALFVRYVD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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