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Report for CCDS26453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26453.1 Public Mus musculus 13 Fars2 23 108 98 CCDS HistoryNCBI Gene:69955Re-query CCDS DB by CCDS ID:26453.1Re-query CCDS DB by GeneID:69955See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021857.12 ENSMUSP00000021857.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021857.12Link to Ensembl Protein Viewer:ENSMUSP00000021857.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021857Re-query CCDS DB by Protein ID:ENSMUSP00000021857
Original member Current member EBI ENSMUST00000224241.1 ENSMUSP00000153628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224241.1Link to Ensembl Protein Viewer:ENSMUSP00000153628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224241Re-query CCDS DB by Protein ID:ENSMUSP00000153628
Original member Current member EBI ENSMUST00000224611.1 ENSMUSP00000153658.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224611.1Link to Ensembl Protein Viewer:ENSMUSP00000153658.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224611Re-query CCDS DB by Protein ID:ENSMUSP00000153658
Original member Current member NCBI NM_024274.3 NP_077236.1 Accepted alive Link to Nucleotide Sequence:NM_024274.3Link to Protein Sequence:NP_077236.1Re-query CCDS DB by Nucleotide ID:NM_024274Re-query CCDS DB by Protein ID:NP_077236Link to BLAST:NP_077236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077236.1 451 Q99M01 451 100% 0 0

Chromosomal Locations for CCDS 26453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36204530 36205141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36232122 36232281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36246363 36246494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36341937 36342097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36410079 36410230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36537301 36537439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGTCTGCTTGGCTCTCGTCAGAGCTGCCTATGAGCACATCTACCTGGTGAGGAAGGTCAGTCATGCCT
GCAGATGCCATCAACATCGGGCTTGGAGCTCAAAGCCAGCTGCATCACAGTCTGCTGTCCAGGGTGCTCC
AGGCAGTGTGCTGGAGATACTTGGTAAATCCTACCCTCAGGATGACCACACTAACCTCACCCAGAAGGTC
CTTTCCAAGGTGGGCAGGAACCTGCACAACCAGAAGTTCCACCCTCTGTGGCTGATTAAGGAGCGGGTGA
AGGAGCACTTCTACCAGCAGTATATGGTGCGATCCAGGACACCTCTATTCTCCGTCTATGACCAGCTTCC
TCCAGTGGTCACCACCTGGCAGAACTTTGATAGCCTGCTAATCCCAGCTGACCACCCCAGCAGGAAAAAG
GGGGACAACTATTACTTGAATCGGGCACACATGCTGAGAGCACACACATCAGCGCATCAGTGGGACTTGC
TGCATGCGGGACTTAATGCCTTCCTTGTGGTAGGTGACGTGTATCGTCGTGACCAGATTGATTGCCAGCA
CTACCCAGTTTTCCACCAGCTGGAGGGTGTCCGGCTCTTCTCCAAGCATGAGTTATTTGCTGGCGTAAAG
GATGGAGAAAGCTTGCAGCTCTTTGAAGAAGGTTCTCGCTCTGCTCATAAGCAGGAGACACACACCATGG
AGGCTGTGAAGCTTGTGGAGTTCGACCTTAAACAAGTACTGACTAGGCTTGTGACACATCTTTTTGGAGA
TGGGCTGGAGGTTCGGTGGGTGGATTGCTACTTCCCCTTCACCCACCCTTCCTTCGAGATGGAGATCAAC
TTCCGTGGAGAATGGCTTGAAGTCCTTGGCTGCGGTGTGATGGAGCAGCAGCTTGTCAATTCAGCTGGTG
CTCAGGATCGAATCGGCTGGGCGTTTGGCCTGGGATTAGAAAGATTGGCGATGGTCCTCTACGACATTCC
TGACATCCGCCTTTTCTGGAGTGAGGATGAGCGCTTCCTGAAGCAGTTCCTCCTGTCGGACATCAACCAG
AGTGTCAAGTTTCAGCCTCTTAGCAAGTACCCCGCCGTGTTCAATGACATTTCATTCTGGCTGCCCTCTG
AGAACTACACGGAGAATGATTTCTATGACATCGTCCGAACAGTCGGAGGAGACCTGGTAGAAAAGGTTGA
TCTTATAGACAAGTTTGAACATCCAAAGACACACAGGACCAGCCACTGCTACCGCATTACCTACCGCCAC
ATGGAACGGACACTGTCCCAGAGAGAAGTCGGCAATGTCCACCAGGCTGTGCAGGAGGCCGCCGTGCAGC
TGCTGGGTGTGGAGGGCCGTTTCTGA

Translation (451 aa):
MVCLALVRAAYEHIYLVRKVSHACRCHQHRAWSSKPAASQSAVQGAPGSVLEILGKSYPQDDHTNLTQKV
LSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMVRSRTPLFSVYDQLPPVVTTWQNFDSLLIPADHPSRKK
GDNYYLNRAHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDCQHYPVFHQLEGVRLFSKHELFAGVK
DGESLQLFEEGSRSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEIN
FRGEWLEVLGCGVMEQQLVNSAGAQDRIGWAFGLGLERLAMVLYDIPDIRLFWSEDERFLKQFLLSDINQ
SVKFQPLSKYPAVFNDISFWLPSENYTENDFYDIVRTVGGDLVEKVDLIDKFEHPKTHRTSHCYRITYRH
MERTLSQREVGNVHQAVQEAAVQLLGVEGRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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