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Report for CCDS9323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9323.1 Public Homo sapiens 13 LNX2 24 110 108 CCDS HistoryNCBI Gene:222484Re-query CCDS DB by CCDS ID:9323.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316334.5 ENSP00000325929.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316334.5Link to Ensembl Protein Viewer:ENSP00000325929.3Re-query CCDS DB by Nucleotide ID:ENST00000316334Re-query CCDS DB by Protein ID:ENSP00000325929
Original member Current member EBI ENST00000649248.1 ENSP00000497224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649248.1Link to Ensembl Protein Viewer:ENSP00000497224.1Re-query CCDS DB by Nucleotide ID:ENST00000649248Re-query CCDS DB by Protein ID:ENSP00000497224
Original member Current member NCBI NM_153371.4 NP_699202.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153371.4Link to Protein Sequence:NP_699202.1Re-query CCDS DB by Nucleotide ID:NM_153371Re-query CCDS DB by Protein ID:NP_699202Link to BLAST:NP_699202.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_699202.1 690 Q8N448 690 100% 0 0

Chromosomal Locations for CCDS 9323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27548335 27548470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27550333 27550491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27553208 27553439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27556236 27556413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27559842 27559985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27562413 27562781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27567640 27567839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27569029 27569276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27581297 27581703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGGAACAACAAGTGATGAGATGGTGTCTGTGGAACAGACCTCCTCCTCTTCTCTAAACCCCCTGTGTT
TTGAATGTGGCCAACAGCACTGGACAAGAGAAAACCATTTGTACAATTACCAGAATGAAGTGGATGATGA
CCTAGTCTGCCATATTTGCCTTCAACCTCTGCTGCAGCCACTAGACACACCCTGTGGACATACATTCTGC
TACAAGTGCCTCAGAAACTTTTTACAAGAGAAAGATTTCTGTCCGTTGGACCGGAAAAGACTTCATTTTA
AGTTGTGCAAGAAGTCTAGTATTCTAGTTCATAAACTCCTAGACAAATTATTAGTTTTATGTCCATTTTC
TTCAGTGTGCAAAGATGTAATGCAACGTTGTGATCTGGAGGCACATCTCAAAAACAGATGTCCTGGAGCT
TCTCATCGGAGAGTTGCCCTGGAGAGAAGGAAAACTAGTAGAACTCAAGCAGAGATTGAGAATGAAAATG
GGCCCACTCTACTAGATCCTGCAGGTACCTTATCTCCAGAAGCAGACTGTTTGGGGACAGGCGCAGTGCC
TGTGGAGCGGCACTTGACATCAGCGTCTCTTTCCACATGGAGTGAGGAGCCTGGCCTTGACAACCCTGCC
TTTGAGGAGAGCGCTGGAGCTGACACCACACAACAGCCACTTAGTTTACCAGAAGGAGAAATCACCACGA
TTGAAATTCATCGGTCCAATCCTTACATTCAGTTAGGAATCAGCATTGTGGGTGGCAACGAAACACCTTT
GATTAACATTGTCATCCAGGAGGTCTATCGGGATGGGGTCATTGCCAGAGACGGGAGACTTCTTGCTGGA
GACCAGATTCTTCAGGTCAACAACTACAATATCAGCAATGTGTCCCATAACTATGCCCGAGCTGTCCTTT
CCCAGCCCTGCAACACACTGCATCTTACTGTGCTTCGAGAGAGGCGCTTTGGCAACCGAGCACACAACCA
TTCTGATAGTAACTCTCCACGAGAAGAGATTTTCCAAGTGGCTCTTCATAAACGGGACTCTGGTGAACAG
CTTGGCATTAAATTGGTGCGAAGGACAGATGAGCCAGGGGTTTTTATTCTTGACCTGTTGGAAGGGGGGT
TGGCTGCCCAGGACGGCAGGCTAAGCAGCAATGACCGAGTGCTGGCCATCAATGGGCACGACCTGAAGTA
TGGAACTCCGGAGCTTGCTGCCCAGATTATTCAGGCCAGTGGAGAGAGAGTGAATTTAACAATTGCTAGA
CCAGGGAAACCCCAGCCTGGTAACACCATTAGAGAAGCAGGAAATCATAGCAGCAGCAGCCAGCACCACA
CACCACCACCGTATTATAGCAGACCAAGCTCACATAAGGATCTTACTCAGTGTGTTACATGCCAAGAAAA
ACACATTACTGTAAAGAAGGAACCACATGAATCCCTTGGCATGACCGTTGCTGGGGGCAGGGGAAGTAAG
AGTGGTGAGCTGCCCATCTTTGTGACCAGTGTGCCACCCCATGGCTGCCTTGCACGAGATGGCAGAATAA
AGAGAGGTGATGTGTTGCTAAATATCAACGGCATTGATTTGACCAATTTAAGTCACAGTGAGGCAGTTGC
AATGCTGAAAGCCAGTGCCGCGTCCCCTGCTGTTGCCCTTAAAGCACTTGAGGTCCAGATTGTTGAGGAG
GCGACTCAGAACGCGGAGGAGCAGCCGAGTACTTTCAGCGAAAATGAGTATGATGCCAGTTGGTCCCCAT
CATGGGTCATGTGGCTTGGGCTTCCCAGCACACTTCATAGCTGCCACGATATAGTTTTACGAAGAAGTTA
CTTGGGAAGTTGGGGCTTTAGTATCGTTGGTGGATATGAAGAGAACCACACCAATCAGCCTTTTTTCATT
AAAACTATTGTCTTGGGAACTCCTGCTTATTATGATGGAAGATTAAAGTGTGGTGACATGATTGTGGCCG
TAAATGGGCTGTCAACCGTGGGCATGAGCCACTCTGCACTAGTTCCCATGTTGAAGGAGCAGAGGAACAA
AGTCACTCTGACCGTTATTTGTTGGCCTGGCAGCCTTGTATAG

Translation (690 aa):
MGTTSDEMVSVEQTSSSSLNPLCFECGQQHWTRENHLYNYQNEVDDDLVCHICLQPLLQPLDTPCGHTFC
YKCLRNFLQEKDFCPLDRKRLHFKLCKKSSILVHKLLDKLLVLCPFSSVCKDVMQRCDLEAHLKNRCPGA
SHRRVALERRKTSRTQAEIENENGPTLLDPAGTLSPEADCLGTGAVPVERHLTSASLSTWSEEPGLDNPA
FEESAGADTTQQPLSLPEGEITTIEIHRSNPYIQLGISIVGGNETPLINIVIQEVYRDGVIARDGRLLAG
DQILQVNNYNISNVSHNYARAVLSQPCNTLHLTVLRERRFGNRAHNHSDSNSPREEIFQVALHKRDSGEQ
LGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIAR
PGKPQPGNTIREAGNHSSSSQHHTPPPYYSRPSSHKDLTQCVTCQEKHITVKKEPHESLGMTVAGGRGSK
SGELPIFVTSVPPHGCLARDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVALKALEVQIVEE
ATQNAEEQPSTFSENEYDASWSPSWVMWLGLPSTLHSCHDIVLRRSYLGSWGFSIVGGYEENHTNQPFFI
KTIVLGTPAYYDGRLKCGDMIVAVNGLSTVGMSHSALVPMLKEQRNKVTLTVICWPGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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