NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8629.1 Public Homo sapiens 12 STYK1 24 110 108 CCDS HistoryNCBI Gene:55359Re-query CCDS DB by CCDS ID:8629.1Re-query CCDS DB by GeneID:55359See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8629.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000075503.8 ENSP00000075503.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000075503.8Link to Ensembl Protein Viewer:ENSP00000075503.3Re-query CCDS DB by Nucleotide ID:ENST00000075503Re-query CCDS DB by Protein ID:ENSP00000075503
Original member Current member NCBI NM_018423.3 NP_060893.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018423.3Link to Protein Sequence:NP_060893.2Re-query CCDS DB by Nucleotide ID:NM_018423Re-query CCDS DB by Protein ID:NP_060893Link to BLAST:NP_060893.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060893.2 422 Q6J9G0 422 100% 0 0

Chromosomal Locations for CCDS 8629.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 10620144 10620348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10621876 10621972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10622638 10622678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10624651 10624859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10627641 10627724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10629493 10629674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10631045 10631308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10633990 10634124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 10634567 10634618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGGCATGACACGGATGCTCCTGGAATGCAGTCTCAGTGACAAGTTGTGTGTCATCCAGGAGAAGCAGT
ATGAAGTGATTATCGTCCCAACTTTGTTGGTTACTATCTTCCTCATCCTTCTTGGGGTCATCCTGTGGCT
TTTTATCAGAGAACAAAGAACTCAACAGCAGCGTTCTGGACCTCAAGGCATTGCCCCTGTTCCTCCACCT
AGGGACCTAAGCTGGGAAGCAGGACATGGAGGAAATGTGGCTTTGCCACTTAAGGAGACATCCGTGGAAA
ACTTTCTGGGAGCTACCACACCTGCCCTGGCTAAGCTGCAGGTGCCGCGGGAGCAACTCTCTGAAGTTCT
GGAGCAGATTTGCAGTGGTAGCTGTGGGCCCATCTTTCGAGCCAATATGAACACTGGGGACCCTTCTAAG
CCCAAGAGTGTTATTCTCAAGGCTTTAAAAGAACCAGCTGGGCTCCATGAGGTACAAGATTTCTTAGGGC
GAATCCAATTCCATCAATACCTGGGGAAACACAAAAACCTGGTGCAGCTGGAAGGCTGCTGCACTGAAAA
GCTGCCACTCTATATGGTGTTGGAGGATGTGGCCCAGGGGGACCTGCTCAGCTTTCTCTGGACCTGTCGG
CGGGATGTGATGACTATGGATGGTCTTCTCTATGATCTCACAGAAAAACAAGTATATCACATCGGAAAGC
AGGTCCTTTTGGCGCTGGAATTCCTGCAGGAGAAGCATTTGTTCCATGGGGATGTGGCAGCCAGGAATAT
TCTGATGCAAAGTGATCTCACTGCTAAGCTCTGTGGATTAGGCCTGGCTTATGAAGTTTACACCCGAGGG
GCCATCTCCTCTACTCAAACCATACCTCTCAAGTGGCTTGCCCCAGAACGGCTTCTCCTGAGACCTGCTA
GCATCAGAGCAGATGTCTGGTCTTTTGGGATCCTGCTCTATGAGATGGTGACTCTAGGAGCACCACCGTA
TCCTGAAGTCCCTCCTACCAGCATCCTAGAGCATCTCCAAAGAAGGAAAATCATGAAGAGACCCAGTAGC
TGCACACATACCATGTACAGTATCATGAAGTCCTGCTGGCGCTGGCGTGAGGCTGACCGCCCCTCACCTA
GAGAGCTGCGCTTGCGCCTAGAAGCTGCCATTAAAACTGCAGATGACGAGGCTGTGTTACAAGTACCAGA
GTTGGTGGTACCTGAACTGTATGCAGCTGTGGCCGGCATCAGAGTGGAGAGCCTCTTCTACAACTATAGC
ATGCTTTGA

Translation (422 aa):
MGMTRMLLECSLSDKLCVIQEKQYEVIIVPTLLVTIFLILLGVILWLFIREQRTQQQRSGPQGIAPVPPP
RDLSWEAGHGGNVALPLKETSVENFLGATTPALAKLQVPREQLSEVLEQICSGSCGPIFRANMNTGDPSK
PKSVILKALKEPAGLHEVQDFLGRIQFHQYLGKHKNLVQLEGCCTEKLPLYMVLEDVAQGDLLSFLWTCR
RDVMTMDGLLYDLTEKQVYHIGKQVLLALEFLQEKHLFHGDVAARNILMQSDLTAKLCGLGLAYEVYTRG
AISSTQTIPLKWLAPERLLLRPASIRADVWSFGILLYEMVTLGAPPYPEVPPTSILEHLQRRKIMKRPSS
CTHTMYSIMKSCWRWREADRPSPRELRLRLEAAIKTADDEAVLQVPELVVPELYAAVAGIRVESLFYNYS
ML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH