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Report for CCDS46196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46196.1 Public Homo sapiens 19 SSC5D 24 110 108 CCDS HistoryNCBI Gene:284297Re-query CCDS DB by CCDS ID:46196.1Re-query CCDS DB by GeneID:284297See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46196.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389623.11 ENSP00000374274.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389623.11Link to Ensembl Protein Viewer:ENSP00000374274.4Re-query CCDS DB by Nucleotide ID:ENST00000389623Re-query CCDS DB by Protein ID:ENSP00000374274
Original member Current member NCBI NM_001144950.2 NP_001138422.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144950.2Link to Protein Sequence:NP_001138422.1Re-query CCDS DB by Nucleotide ID:NM_001144950Re-query CCDS DB by Protein ID:NP_001138422Link to BLAST:NP_001138422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138422.1 1573 A1L4H1-1 1573 100% 0 0

Chromosomal Locations for CCDS 46196.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55488590 55488614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55489006 55489032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55489354 55489662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55489882 55489995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55490298 55490408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55490772 55491080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55493595 55493912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55494610 55494783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55497880 55498197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55499816 55500412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55500490 55500804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55501034 55501201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55513011 55513172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55517224 55518998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4722 nt):
ATGAGGGTCTTGGCCTGCCTCCTTGCGGCCCTGGTGGGGATCCAGGCTGTTGAGCGCCTGCGCCTGGCCG
ATGGCCCCCATGGGTGCGCTGGCCGCCTGGAGGTCTGGCATGGCGGGCGCTGGGGCACCGTGTGTGATGA
CGGCTGGGACCTGCGCGATGCCGCCGTGGCCTGCCGGCAGCTGGGCTGCGGAGGGGCACTGGCCGCCCCG
GGAGGCGCCTTCTTCGGGGAGGGGGCAGGGCCTGTGTGGCTCAGCGAGCTGGCTTGCCGGGGCAACGAGG
GGCAGCTGGGCCTCTGCCACCACCGGGGCTGGAAGGCCCACATCTGCTCCCACGAGGAGGACGCGGGCGT
CGTCTGCGCAGGTCAGCGTGTGGCTAACTCCAGGGACGACTCAACATCTCCCCTGGATGGGGCTCCCTGG
CCAGGGCTGTTGCTGGAGCTGAGCCCCAGCACGGAGGAGCCCCTGGTGACACATGCCCCCCGCCCAGCTG
GGAACCCCCAGAACGCCTCCCGGAAGAAGAGCCCCCGGCCCAAGCAGGCCAAGTCCACCCGGGCCCCTCT
GCTGACGACAGGAGCCCCCCGCCAAGAGCGGCTGCGCCTGGTCTCTGGCCCCCACAGGTGCGCCGGACGC
CTGGAGGTCTGGCACGGCGGGCGCTGGGGCACCGTATGTGACGATGGCTGGGACCTGCGCGACGCTGCTG
TAGCCTGCCGGGAACTGGGCTGTGGGGGGGCGCTGGCTGCCCCCGGCGGTGCCAGATTCGGGCCTGGTGC
AGGGCCCGTGTGGATGGACGATGTGGGGTGTGGAGGAGGAGAACAGGCCCTCCGAGACTGCCCCCGAAGC
CCCTGGGGCCGGAGCAACTGTGACCACAGCGAGGATGCGGGGCTGGTCTGCACCGGCCCAGCACCTCGGC
TGCGCCTGGCCGATGGCCCCCACGGGTGCGCCGGCCGCCTGGAGGTCTGGCACGGGGGTCGCTGGGGGTC
GGTGTGTGACGACGCCTGGGACCTGCGAGACGCCGCTGTGGCCTGCCGAGAGCTGGGCTGCGGAGGGGCG
CTGGCCGCCCCCGGGGGCGCCTTCTTTGGGGAGGGGTCTGGACCCATCATCCTGGACGACCTTCGGTGTC
GGGGAAACGAGACGGCCTTACGATTCTGCCCAGCTCGGCCCTGGGGCCAGCATGACTGTCACCACCGCGA
GGACGCCGGGGCCGTGTGTGACGGCATGCCCCTGGGCTACGTCCCTCCCACGGCCCCCACGGACAGCAAC
AACTCCACGCCCAGGGAGGCTGCCTCCAGGCCCCCGTCCACCATGACGAGCCAGGCTCCAGGGACGGCAG
GCGTTTCACCTCCTCCAGCCTCCCCTACTGTCCTTTGGGAGCCTGGACCGGAAGCCGGGTCCCCCCAGCT
GCGCCTGGTGGCTGGGCCCAGCAAGTGCTCAGGTCGACTGGAGGTGTGGCATGACCAGCGCTGGGGGACC
GTGTGTGACGATAGCTGGGACATGCGGGATTCAGCTGTGGTCTGCCGGGAGCTGGGCTGTGGTGGACCTC
AGCAGCCAGACCCTGCTGCTGGCCGCTTTGGCTGGGGTGCGGGCCCCATCTGGCTAGATGATGTGGGCTG
TGTGGGGACCGAGGCTTCACTGTCCGACTGCCCTGCTGCTCCCTGGGGAAAGCACAACTGCGCTCACAAT
GAGGATGTTGGGGTCACCTGCACTGGGCCCCCAGGCCTGGACTCCATCTCAGACCCCTTCAGCTGGAGCT
GGATTCCTGGACTGGGGAGAGATCGGGATGCCTGGCTCCCGGGAGAGCTGGCCACCAAGCCCTCTGCAAG
TGTGACTGCCAGTGTTCTGGAGAAAACAACCACGAAGGCCCCAGGGAAAATGCCTAAGAGTACTAAGAAG
TGGGTGACAAAAAATGCAAAGAGACCAACCACTCAACCCCCAGTGATGCCAACCACGAAACACTCCAGGG
CCCAAAGCCCCCCAGACCTAACCTCACAGACCACTGCAGCACTGACCACTGAGGCCTCCCGAAGACCTAC
CTCTGAGTTTACCAGAAGGCCGACCACGGAGGCCCCCCAGAGATGGACCTCTCACACCACTGCCACGCTG
ACCCCTCAGGCCCCCCGAGAACGGACCACTAAGACCATGGCAATGCTGACCACTCAAGGCCCCCAAGAAA
TGACCTCTGAGTCCACTATCAAGAGTATCCCTCAGGCCTCCCTGGAGCCATCTGCTGAGATCCCAGAAGG
GTCTCCAGAGTCACCCAAAGACCCGGCCCCCTCTCCCAGTGTTAGCACCACTGGGGAATCAGGCCTGTTC
CGGGTTCGTCTGGCCGATGGGCCCAACCGCTGTGCTGGCCGGCTGGAAGTGTGGCATGCCGGACGCTGGG
GAACAGTGTGTGATGACAACTGGGACCTGCGGGACGCCACTGTGGCCTGCTGGGAACTGGGCTGTGGAAA
GGTCCGGCCTCGAGTAGGCAAAACCCATTACGGCCCTGGGACTGGGCCCATCTGGCTGGATGACATGGGC
TGTAAGGGAAGCGAGGCCTCACTGAGCGACTGCCCCTCGGGGGCTTGGGGGAAGCACAACTGTGACCACG
AGGAAGACGTGGGGCTCACCTGCACTGGCTACACAGACTATGACGATTATCCCCCCTGGACCTGGGACCC
CACCTCAAGAGAGGACCTGGCCAAGGGGACTACCACAGCGGGGGTACCTGGACACACTCTCCCCTGGAGG
ACCACCCGGCGCCCGGGTAGCTCCTCCCCAGCAATAAGGCGCCTGCCGGACACAGGCAGCAAAGATGGTT
ACAAGCTTCCCTGGACGTGGGACACACCATCAGGAAGGGGCCTGGCTGAGGGGACCCCTACCGCAGGCAA
ACTAGGACCAACTCTTGGGGCTGGCACCACCAGGAGCCCAGGCAGTCCTCCAACTCTGAGAGTCCATGGA
GACACAGGTTCCCCGAGGAAACCGTGGCCCGAGCGCCGGCCACCGCGGCCCGCTGCGACCAGGACAGCGC
CCCCAACCCCGTCCCCAGGTCCCTCCGCCTCTCCGGGACCCCCAGGCCCAGCGCTGACCTCTGACTCCAG
TCGAGAGCTCACTCCCCACTCAGCCTTGACGTCCGAGGCGACCTCTGACGCTCCGGACACTTCACCACCC
ACCCCAGACCCGGCCTCCCGGACGAACCCCGACCTCATCTTGACAAGCCCTGACTTTGCTTTGTCCACCC
CTGACTCCAGTGTGGTTCCCGCGTTGACCCCGGAGCCCTCACCCACGCCCTTACCCACCTTGCCCAAAGA
GCTGACCTCTGACCCTTCTACACCGTCGGAGGTGACCAGCCTTTCCCCTACCTCAGAGCAGGTCCCAGAA
TCTGACACAACCCCAGATTTGGACACAACTCCATACTCCAGTACAGTCTCAGAATATTCTAGATCCCCAG
ACCCCTCCCCAAGCCCTCACCCCACTACTACCCCTGATCCCACCATGGCCCCTGACCCCATCACAACCCT
TAACCCTACTGTGACCCCTCACTTCCCTACCACCCCTCACCCCACCACGACCCCTCACCCCACCACCATC
ACTCACTCCACCATGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATCACTCACTCCACCA
TGATTCCTGACCCCACCACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACAACCCCTCACTCCAC
AACCCCTCACCCCACCACGACCCCTCATCCCACCACCATCACTCACTCCACCATGATTCCTGACCCCACC
ACAACCCCTCAACCCTTCACCACCATGCAGCCCACCACGATGCCTCATCCCACCACGACCCCTCACCCCA
CCACGACTCCTCACCCCACCACAACCCCTCACCCCACCACAACCCCTCACCCCACCATGACTCCTGACCC
CACCACGACCCCTTACCCCACCACTACTCCTGATCCCACCACGACCCCTCACCCCACAACTCCTGACCCT
TCCTCAACCCCTGTCATCACTACTGTGTCCCTTCCAACCTCCTTGGGGACAGAACTCTCCTCTCCCACTC
TAGCACCAACAGTCAAGCCCAGTCTGCACCCCCAGTTGACCTTCACAGCACCTGCCCCTCACACCTCCAC
ATCCCAGATACCCACCTTAGAGCCCTCTCCAGCCTTGGAGTCCAGCCCCTCCAGGTCCTCCACAGCCACA
AGCATGGACCCACTGTCCACTGAGGACTTCAAGCCACCCAGAAGCCAGAGCCCCAACCTAACCCCTCCAC
CCACCCATACCCCACACTCAGCCTCTGACCTTACTGTGTCCCCTGACCCCCTCCTTTCCCCCACAGCCCA
CCCCTTGGATCATCCTCCCCTTGACCCCCTCACCCTAGGGCCAACTCCTGGTCAGAGCCCAGGCCCCCAT
GGTCCATGTGTGGCCCCAACACCACCTGTAAGGGTCATGGCTTGTGAGCCACCTGCCCTGGTGGAGCTGG
TGGCTGCTGTGAGGGATGTGGGTGGTCAGCTGCAGAGACTGACCCAGGTCGTGGAACAGGAGCGGCAGGA
GCGCCAAGCCCTGCTGCTGGGGCTGACGCAGCTGGTAGAAGCTGCCCGGGGTCTGGGGCAGCTGGGTGAG
GCTGTGAAGAGACTGGCAGAGATGGCCTGGACCACCAGCATGCCTGCACCAACCACCACTACCCCAGAGG
AAGAAGAAAGACCCCTGAGGGGAGACGTGTGA

Translation (1573 aa):
MRVLACLLAALVGIQAVERLRLADGPHGCAGRLEVWHGGRWGTVCDDGWDLRDAAVACRQLGCGGALAAP
GGAFFGEGAGPVWLSELACRGNEGQLGLCHHRGWKAHICSHEEDAGVVCAGQRVANSRDDSTSPLDGAPW
PGLLLELSPSTEEPLVTHAPRPAGNPQNASRKKSPRPKQAKSTRAPLLTTGAPRQERLRLVSGPHRCAGR
LEVWHGGRWGTVCDDGWDLRDAAVACRELGCGGALAAPGGARFGPGAGPVWMDDVGCGGGEQALRDCPRS
PWGRSNCDHSEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAWDLRDAAVACRELGCGGA
LAAPGGAFFGEGSGPIILDDLRCRGNETALRFCPARPWGQHDCHHREDAGAVCDGMPLGYVPPTAPTDSN
NSTPREAASRPPSTMTSQAPGTAGVSPPPASPTVLWEPGPEAGSPQLRLVAGPSKCSGRLEVWHDQRWGT
VCDDSWDMRDSAVVCRELGCGGPQQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSDCPAAPWGKHNCAHN
EDVGVTCTGPPGLDSISDPFSWSWIPGLGRDRDAWLPGELATKPSASVTASVLEKTTTKAPGKMPKSTKK
WVTKNAKRPTTQPPVMPTTKHSRAQSPPDLTSQTTAALTTEASRRPTSEFTRRPTTEAPQRWTSHTTATL
TPQAPRERTTKTMAMLTTQGPQEMTSESTIKSIPQASLEPSAEIPEGSPESPKDPAPSPSVSTTGESGLF
RVRLADGPNRCAGRLEVWHAGRWGTVCDDNWDLRDATVACWELGCGKVRPRVGKTHYGPGTGPIWLDDMG
CKGSEASLSDCPSGAWGKHNCDHEEDVGLTCTGYTDYDDYPPWTWDPTSREDLAKGTTTAGVPGHTLPWR
TTRRPGSSSPAIRRLPDTGSKDGYKLPWTWDTPSGRGLAEGTPTAGKLGPTLGAGTTRSPGSPPTLRVHG
DTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGPALTSDSSRELTPHSALTSEATSDAPDTSPP
TPDPASRTNPDLILTSPDFALSTPDSSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTSEQVPE
SDTTPDLDTTPYSSTVSEYSRSPDPSPSPHPTTTPDPTMAPDPITTLNPTVTPHFPTTPHPTTTPHPTTI
THSTMIPDPTTTPQPFTTITHSTMIPDPTTTPQPFTTMQPTTTPHSTTPHPTTTPHPTTITHSTMIPDPT
TTPQPFTTMQPTTMPHPTTTPHPTTTPHPTTTPHPTTTPHPTMTPDPTTTPYPTTTPDPTTTPHPTTPDP
SSTPVITTVSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPALESSPSRSSTAT
SMDPLSTEDFKPPRSQSPNLTPPPTHTPHSASDLTVSPDPLLSPTAHPLDHPPLDPLTLGPTPGQSPGPH
GPCVAPTPPVRVMACEPPALVELVAAVRDVGGQLQRLTQVVEQERQERQALLLGLTQLVEAARGLGQLGE
AVKRLAEMAWTTSMPAPTTTTPEEEERPLRGDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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