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Report for CCDS4531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4531.1 Public Homo sapiens 6 RNF182 24 110 108 CCDS HistoryNCBI Gene:221687Re-query CCDS DB by CCDS ID:4531.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4531.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000488300.6 ENSP00000420465.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000488300.6Link to Ensembl Protein Viewer:ENSP00000420465.1Re-query CCDS DB by Nucleotide ID:ENST00000488300Re-query CCDS DB by Protein ID:ENSP00000420465
Original member Current member EBI ENST00000537388.1 ENSP00000441271.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537388.1Link to Ensembl Protein Viewer:ENSP00000441271.1Re-query CCDS DB by Nucleotide ID:ENST00000537388Re-query CCDS DB by Protein ID:ENSP00000441271
Original member Current member EBI ENST00000544682.5 ENSP00000442021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544682.5Link to Ensembl Protein Viewer:ENSP00000442021.1Re-query CCDS DB by Nucleotide ID:ENST00000544682Re-query CCDS DB by Protein ID:ENSP00000442021
Original member Current member EBI ENST00000537663.5 ENSP00000443228.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537663.5Link to Ensembl Protein Viewer:ENSP00000443228.1Re-query CCDS DB by Nucleotide ID:ENST00000537663Re-query CCDS DB by Protein ID:ENSP00000443228
Original member Current member NCBI NM_001165032.2 NP_001158504.1 Accepted alive Link to Nucleotide Sequence:NM_001165032.2Link to Protein Sequence:NP_001158504.1Re-query CCDS DB by Nucleotide ID:NM_001165032Re-query CCDS DB by Protein ID:NP_001158504Link to BLAST:NP_001158504.1
Original member Current member NCBI NM_001165033.2 NP_001158505.1 Accepted alive Link to Nucleotide Sequence:NM_001165033.2Link to Protein Sequence:NP_001158505.1Re-query CCDS DB by Nucleotide ID:NM_001165033Re-query CCDS DB by Protein ID:NP_001158505Link to BLAST:NP_001158505.1
Original member Current member NCBI NM_001165034.2 NP_001158506.1 Accepted alive Link to Nucleotide Sequence:NM_001165034.2Link to Protein Sequence:NP_001158506.1Re-query CCDS DB by Nucleotide ID:NM_001165034Re-query CCDS DB by Protein ID:NP_001158506Link to BLAST:NP_001158506.1
Original member Current member NCBI NM_152737.4 NP_689950.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152737.4Link to Protein Sequence:NP_689950.1Re-query CCDS DB by Nucleotide ID:NM_152737Re-query CCDS DB by Protein ID:NP_689950Link to BLAST:NP_689950.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158504.1 247 Q8N6D2 247 100% 0 0
NP_001158505.1 247 Q8N6D2 247 100% 0 0
NP_001158506.1 247 Q8N6D2 247 100% 0 0
NP_689950.1 247 Q8N6D2 247 100% 0 0

Chromosomal Locations for CCDS 4531.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 13977120 13977863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCCAGTCAACCTCCTGAAGACACTGCGGAGTCTCAGGCCTCTGATGAGCTGGAGTGCAAAATCTGTT
ACAATCGATACAATCTGAAACAGAGGAAACCCAAAGTGCTGGAGTGTTGTCATAGGGTTTGTGCCAAATG
CCTCTACAAGATCATAGACTTTGGGGACTCCCCACAAGGTGTCATTGTCTGTCCTTTCTGCAGGTTTGAG
ACGTGCCTGCCAGATGATGAAGTTAGTAGCCTGCCCGATGACAACAACATCCTTGTAAACTTGACTTGTG
GAGGCAAAGGGAAGAAGTGCCTGCCAGAGAACCCTACTGAGCTGCTGCTCACCCCCAAGAGGCTGGCCTC
TCTGGTCAGTCCTTCTCACACGTCCTCCAACTGCCTGGTCATAACCATCATGGAGGTGCAGAGAGAGAGC
TCCCCGTCCCTGAGCTCCACTCCTGTGGTAGAATTTTATAGGCCTGCGAGTTTCGACTCTGTCACCACTG
TGTCACACAACTGGACTGTGTGGAACTGCACGTCCCTGCTGTTTCAGACATCCATCCGGGTGTTAGTGTG
GTTGCTAGGTTTGCTCTACTTCAGCTCCTTACCCTTAGGAATCTACTTACTGGTGTCTAAGAAAGTCACC
CTTGGGGTCGTCTTTGTCAGCCTGGTCCCTTCGAGCCTCGTTATTCTTATGGTGTATGGTTTTTGCCAGT
GTGTTTGTCATGAATTTCTAGACTGTATGGCACCTCCTTCTTAA

Translation (247 aa):
MASQPPEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRFE
TCLPDDEVSSLPDDNNILVNLTCGGKGKKCLPENPTELLLTPKRLASLVSPSHTSSNCLVITIMEVQRES
SPSLSSTPVVEFYRPASFDSVTTVSHNWTVWNCTSLLFQTSIRVLVWLLGLLYFSSLPLGIYLLVSKKVT
LGVVFVSLVPSSLVILMVYGFCQCVCHEFLDCMAPPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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