CCDS
Home
FTP
Process
Releases & Statistics
Collaborators
EBI
HGNC
MGI
NCBI
Contact Us
email CCDS
Genome Displays Related Resources
Gene
HomoloGene
MANE
RefSeq
|
![](/corehtml/transparent.gif) |
Report for CCDS41031.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
41031.1 |
Public |
Mus musculus |
X |
Brcc3 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:210766](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:41031.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:210766](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 41031.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000033544.13 |
ENSMUSP00000033544.7 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000033544.13](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000033544.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000033544](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000033544](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000114074.7 |
ENSMUSP00000109708.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000114074.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000109708.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000114074](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000109708](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001166457.1 |
NP_001159929.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001166457.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159929.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001166457](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159929](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159929.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001166459.1 |
NP_001159931.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001166459.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159931.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001166459](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159931](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159931.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001358736.1 |
NP_001345665.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001358736.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345665.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001358736](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345665](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345665.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001358737.1 |
NP_001345666.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001358737.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001345666.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001358737](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001345666](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001345666.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_145956.4 |
NP_666068.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_145956.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_666068.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_145956](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_666068](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_666068.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 41031.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (876 nt): ATGGCGGTGCAGGTGGTGCAAGCTGTGCAGGCGGTTCATCTTGAGTCTGACGCTTTCCTAGTTTGTCTCA ACCATGCTCTGAGCACAGAAAAGGAGGAAGTGATGGGTCTGTGTATAGGGGAGTTGAATGATGACATAAG GAGTGACTCCAAATTTACATACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGATGGATACCATCAGA ATTGTTCATATCCATTCTGTCATCATCTTGCGGCGTTCTGACAAGAGAAAGGACCGTGTAGAAATTTCTC CAGAGCAGCTGTCTGCAGCTTCAACAGAGGCAGAAAGGTTGGCTGAACTAACAGGTCGTCCCATGAGAGT TGTTGGCTGGTATCATTCCCACCCTCATATAACTGTTTGGCCTTCACATGTTGATGTTCGTACACAAGCC ATGTACCAAATGATGGATCAAGGCTTTGTAGGACTTATTTTTTCCTGTTTCATAGAAGACAAAAACACAA AGACTGGCCGGGTACTCTATACTTGCTTCCAATCCATACAAGCCCAAAAAAGCTCAGAGTATGAGAGAAT TGAAATCCCAATCCATATTGTACCTCATATCACTATTGGGAAAGTATGCCTTGAATCTGCAGTAGAGCTG CCAAAAATCCTGTGTCAGGAAGAACAGGATGCATATAGAAGGATTCACAGCCTTACACATCTGGACTCAG TGACCAAGATCCATAATGGCTCAGTATTTACCAAGAATTTGTGCAGTCAGATGTCAGCAGTCAGTGGGCC TCTACTGCAGTGGTTGGAAGACAGATTGGAGCAAAACCAGCAGCATTTGCAGGAGTTGCAACAAGAAAAG GAAGAGCTTATGGAAGAGCTGTCTTCCCTAGAATAA
Translation (291 aa): MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMDTIR IVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQA MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIPIHIVPHITIGKVCLESAVEL PKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEK EELMEELSSLE
|