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Report for CCDS34456.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34456.1 Public Homo sapiens 6 LRRC73 24 110 108 CCDS HistoryNCBI Gene:221424Re-query CCDS DB by CCDS ID:34456.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34456.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372441.2 ENSP00000361518.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372441.2Link to Ensembl Protein Viewer:ENSP00000361518.1Re-query CCDS DB by Nucleotide ID:ENST00000372441Re-query CCDS DB by Protein ID:ENSP00000361518
Original member Current member NCBI NM_001012974.4 NP_001012992.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012974.4Link to Protein Sequence:NP_001012992.1Re-query CCDS DB by Nucleotide ID:NM_001012974Re-query CCDS DB by Protein ID:NP_001012992Link to BLAST:NP_001012992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012992.1 316 Q5JTD7 316 100% 0 0

Chromosomal Locations for CCDS 34456.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43507238 43507308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43507456 43507678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43507826 43507926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43508298 43508420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43508760 43508920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43509514 43509785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTGCCCAGCTCCATCCAGATTTCGGGGGAGCCGCTGTCCGGCGCCGAGGTGCGGGACATCTGCCGCG
GCCTTCGCGACAACGCCGTGCGCCTGCTCTCACTGCGCGGCTGCCGCCTCTGCGACCGCGACTTTGGCCG
CATCTGCCGGGCCCTGGCCGGGGCCACGTCCCTGGCGCAGCTCAACCTTAACCTGGGCGTCGTGTCCAGC
CCCAGCCGCATCAAGCAGCTGGCTGAGGCTCTGCGGACCAACCGCTCCATCCAGTCCCTCTTCCTGCATG
GGAGCCCCCTGACAGATGCGGGGCTGGCCTTGCTGAACCCAGCCCTGGCCCTCCACCCTGCCCTCGTGGC
TCTGGACCTGGGGGACTGCATGCTGGGTGATGAAGCCATCAACCTCATCTGTGGCCTCCTGCCCCCAGAT
GGGGCCAAATCTGGCTTGAAGGAGCTAACGCTGAGTGCCAACCCTGGCATCACCCCTAAGGGCTGGAGCC
GCCTTGCCATTGCCGTGGCCCACAGCTCCCAGGTCCGCGTCCTCAATCTGGATTACAACCCCCTGGGTGA
CCATGTGGCAGGAATGCTGGCTGTAGCTGTGGCCTCTAGTCGTACCCTAGAGGTCCTAGACTTGGAGGGC
ACAGGGCTCACCAACCAGTCAGCTCAGACCCTGCTGGACATGGTAGAAAATTACCCCACAGCTTTGCGGA
GCCTGGTGTTGGCTGAGAACAGCATTAGCCCAGAGCTGCAGCAACAGATCTGTGACCTCCTCTCTGAGGG
AGAGGAGGAGGAGGAAGTGGCAGGAGGGGCTGGCGACACCCAGGAATGGGAGAGAGGGCGGGAGCCTGCT
GCCCACCAGAGAGGCAGCAGCTCCTGGATGTGCCCCAGCGATCCCAGCTCTCAGATGGTGCTAATGACGT
CAGGACTAGGGGACAGTCTGTTGGCTGAGACCGAGATGTGA

Translation (316 aa):
MLPSSIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRDFGRICRALAGATSLAQLNLNLGVVSS
PSRIKQLAEALRTNRSIQSLFLHGSPLTDAGLALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPD
GAKSGLKELTLSANPGITPKGWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEG
TGLTNQSAQTLLDMVENYPTALRSLVLAENSISPELQQQICDLLSEGEEEEEVAGGAGDTQEWERGREPA
AHQRGSSSWMCPSDPSSQMVLMTSGLGDSLLAETEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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