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Report for CCDS17655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17655.1 Public Mus musculus 3 Or13l2 23 108 98 CCDS HistoryNCBI Gene:258272Re-query CCDS DB by CCDS ID:17655.1Re-query CCDS DB by GeneID:258272See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060912.3 ENSMUSP00000057416.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060912.3Link to Ensembl Protein Viewer:ENSMUSP00000057416.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060912Re-query CCDS DB by Protein ID:ENSMUSP00000057416
Original member Current member EBI ENSMUST00000199297.3 ENSMUSP00000149714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199297.3Link to Ensembl Protein Viewer:ENSMUSP00000149714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199297Re-query CCDS DB by Protein ID:ENSMUSP00000149714
Original member Current member NCBI NM_146275.1 NP_666387.1 Accepted alive Link to Nucleotide Sequence:NM_146275.1Link to Protein Sequence:NP_666387.1Re-query CCDS DB by Nucleotide ID:NM_146275Re-query CCDS DB by Protein ID:NP_666387Link to BLAST:NP_666387.1

Chromosomal Locations for CCDS 17655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97410217 97411179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGACTCCATTTGAAATGACCAATCACACACGTGTCACAGAATTCATCTTCCTGGGATTTTCCAACCACC
CCAACCTACAGGGTGTCTTCTTCCTGGCCTTCCTGGCCATTTACCTGACAACTCTCCTGGGGAACACACT
CATGATAGTGGCCACCAGGGTCAGCCCTGCACTCCACACTCCAATGTACTATTTCCTCAGCAACTTGAGC
TTCCTGGACATCTGCTACACATCTACCTCCATTCCAGTCATGCTAGTGAACTTCTTCAGGGAGAAGAAGA
CCATCTCCTTTGAGGGCTGCCTCTCTCAGATCTTCTTCTTTGTGTCATGTGCTGGAACTGAATGTGTCTT
GTTGGCTGCCATGGCATATGACCGCTATGTGGCCGTTTGTCACCCTCTTCGGTATCCAGTTCTCATGAGC
ACAAGGGTCTGTATCAGCTTGGTGACTGGATCCTGGCTCTGTGGCTTGGTGAATTCTGTGACTCACACAG
TATTGACAAGCACACTTACTCTGTGTGGCCCCAACCAAATCAGCCACTTCCTCTGTGATGTCCCATTGCT
CCTGAAGCTCTCCTGCTCAGACACCTCTGTCAATGAATCTGTCCTCCATGTGTCCAGTGCCACTGTTGGC
CTGAGTCCCTGCCTGTTCACTGCAGGCTCCTATATACTGATCATCTCTGCCATCCTGAGGATTCCCTCTA
CTCAGGGCAAGAGAAAGGCCTTCTCCACCTGTGCCTCACACCTCACTGTGGTGGTGGTTTTCTTTGGAAC
AGCCAACTTCAACTATGTCAGACCCAAGGAAGGCTACTCCCTGGACATGGGCATATTAGTGTCTGTGCTC
TACTGTGTTGTGACCCCCCTGTTTAATCCCATCATCTACAGCCTGAGGAACAAGGAGGTCAAAGGTGCGC
TGAGAAAACTGACTGGAGTGCCTTCCTTAACAATAGCAGTGGCTAGAGAGTAA

Translation (320 aa):
MTPFEMTNHTRVTEFIFLGFSNHPNLQGVFFLAFLAIYLTTLLGNTLMIVATRVSPALHTPMYYFLSNLS
FLDICYTSTSIPVMLVNFFREKKTISFEGCLSQIFFFVSCAGTECVLLAAMAYDRYVAVCHPLRYPVLMS
TRVCISLVTGSWLCGLVNSVTHTVLTSTLTLCGPNQISHFLCDVPLLLKLSCSDTSVNESVLHVSSATVG
LSPCLFTAGSYILIISAILRIPSTQGKRKAFSTCASHLTVVVVFFGTANFNYVRPKEGYSLDMGILVSVL
YCVVTPLFNPIIYSLRNKEVKGALRKLTGVPSLTIAVARE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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