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Report for CCDS27794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27794.1 Public Mus musculus 15 Or8s8 23 108 98 CCDS HistoryNCBI Gene:258277Re-query CCDS DB by CCDS ID:27794.1Re-query CCDS DB by GeneID:258277See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27794.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109163.3 ENSMUSP00000104791.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109163.3Link to Ensembl Protein Viewer:ENSMUSP00000104791.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109163Re-query CCDS DB by Protein ID:ENSMUSP00000104791
Original member Current member EBI ENSMUST00000217517.1 ENSMUSP00000150530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217517.1Link to Ensembl Protein Viewer:ENSMUSP00000150530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217517Re-query CCDS DB by Protein ID:ENSMUSP00000150530
Original member Current member NCBI NM_146280.1 NP_666392.1 Accepted alive Link to Nucleotide Sequence:NM_146280.1Link to Protein Sequence:NP_666392.1Re-query CCDS DB by Nucleotide ID:NM_146280Re-query CCDS DB by Protein ID:NP_666392Link to BLAST:NP_666392.1

Chromosomal Locations for CCDS 27794.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98456312 98457247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCCTGGAGCAACCACAGCGTCATCACGGAGTTCGTTCTCACCGGGCTCTCTGACGACCCCCTGATCC
AGGCTCTACTTTTCGCGCTGTTCCTGGGGATTTACGTCCTCACCATGACGGGGAACCTGACGATGCTGCT
GGTGATCACGGCTGACTCCCACCTCCACACGCCCATGTACTTCTTCCTAAGTAACCTGTCCTTCCTGGAT
CTCTGCTTCTCATCCGTCACGGTACCGAAGCTGCTGAAGGACCTGCTGTCTGCTAAGAAAACCATCTCTG
TAGAGGGCTGCCTGGCTCAGGTCTTCTTCGTGTTCATCACTGCGGGAACCGAAGCCTTTCTTCTGTCAAT
GATGGCGTACGACCGCTACGCGGCTGTCTGCCACCCGCTACTCTATGGGCAGATGATGAGCAACGAACTC
TGTCTGAAGTTGGTTTTGCTCTCATGGGGCCTGGCCTCTCTCAGTTCAGTAGTCATTGTGCTCTTGGCGG
TGAACCTGGACTTCTGCGAGGCCTACACCATACACCACTACACGTGTGAGTTACCCTCTCTCTTTCCTTT
GTCTTGCTCAGATATCTCCATCAACGTGGACATCTTGATCTGCTCTACCCTGCTGCACGGGCTGGGGACC
TTTCTCCCAATCTTCTTTTCTTATGCCCGCATTGTATCCACCGTGCTGAGCATGGAATCCACCACGGGGA
GAAGCAAGGCGTTTAACACCTGCTCTTCTCACCTCATAGCCGTGGTCCTGTTTTTCGGGTCCGGCTTGAT
TCGTTATCTTATGCCCACATCTGGCTCTTCTCTGGACTTGCTCTCTTCCTTGCAGTACAGCGCAGTCACG
CCCATGCTAAATCCCCTCATCTACAGCCTGAAGAACCAGGAGGTGAAGGCCGCTGTGAGAAGGACATTAG
GGAAGTGCCTGCGATACTTGGAGTGA

Translation (311 aa):
MAWSNHSVITEFVLTGLSDDPLIQALLFALFLGIYVLTMTGNLTMLLVITADSHLHTPMYFFLSNLSFLD
LCFSSVTVPKLLKDLLSAKKTISVEGCLAQVFFVFITAGTEAFLLSMMAYDRYAAVCHPLLYGQMMSNEL
CLKLVLLSWGLASLSSVVIVLLAVNLDFCEAYTIHHYTCELPSLFPLSCSDISINVDILICSTLLHGLGT
FLPIFFSYARIVSTVLSMESTTGRSKAFNTCSSHLIAVVLFFGSGLIRYLMPTSGSSLDLLSSLQYSAVT
PMLNPLIYSLKNQEVKAAVRRTLGKCLRYLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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