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Report for CCDS15984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15984.1 Public Mus musculus 2 Or1n1 23 108 98 CCDS HistoryNCBI Gene:258944Re-query CCDS DB by CCDS ID:15984.1Re-query CCDS DB by GeneID:258944See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100150.1 ENSMUSP00000097727.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100150.1Link to Ensembl Protein Viewer:ENSMUSP00000097727.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100150Re-query CCDS DB by Protein ID:ENSMUSP00000097727
Original member Current member EBI ENSMUST00000213676.1 ENSMUSP00000149369.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213676.1Link to Ensembl Protein Viewer:ENSMUSP00000149369.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213676Re-query CCDS DB by Protein ID:ENSMUSP00000149369
Original member Current member EBI ENSMUST00000215137.1 ENSMUSP00000150346.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215137.1Link to Ensembl Protein Viewer:ENSMUSP00000150346.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215137Re-query CCDS DB by Protein ID:ENSMUSP00000150346
Original member Current member NCBI NM_146942.1 NP_667153.1 Accepted alive Link to Nucleotide Sequence:NM_146942.1Link to Protein Sequence:NP_667153.1Re-query CCDS DB by Nucleotide ID:NM_146942Re-query CCDS DB by Protein ID:NP_667153Link to BLAST:NP_667153.1

Chromosomal Locations for CCDS 15984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 36859414 36860346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGAATGAGTCCAGTGTCTCTGAATTTTTTCTACAAGGAATATCAGGGTTCTCAGAGCAACAGCAGC
TACTCTATGGACTTTTTCTGTGTATGTATCTTGTCACCTTGACTGGGAATGTGCTCATTATCCTGGCCAT
TGGCTCTGACCCACACCTTCACACTCCTATGTACTTCTTTTTGGCCAACTTGTCCTTTGCTGACATGGGT
TTAATATCATCTACAGTGACCAAGATGTTGTTTAATGTTCAGACAAGGTGCCATACCATTTCCTATACTG
GTTGTCTCACACAGATGTATTTCTTTCTGATGTTTGGTGATCTGGACAGCTTCCTCCTGGCTGTGATGGC
CTATGACCGCTATGTGGCCATCTGTCACCCTCTCCACTATTCCACAATAATGAGTGCCCGAGTCTGTGCC
CTGATGCTTGCCTTGTGTTGGGTTCTCACCAACATAGTTGCCCTGACTCACACTCTCCTCATGGCTCGAC
TGTCCTTCTGTGTTGTTGGGGAAATAGCTCACTTTTTCTGTGACATTACTCCTGTCCTGAAGCTCTCATG
CTCTGACACTCATGTCAATGAACTTATGGTATTTGCCTTAGGGGGTACAGTACTCATGGTCCCTTTTGTA
TGCATTGTTATCTCGTATATTCACATTGTATTTGCCATCCTAAAGGTTCGAACCCCTGGTGGCGGTACAA
AGGCCTTTTCTACGTGTAGTTCCCACCTCTGTGTGGTCTGTGTTTTCTATGGAACACTCTTCAGTGCCTA
CTTATGCCCTCCCTCTGTAGTCTCTACAGAAAAGGATGTTGCAGCTGCTGCGATGTATACAGTGGTGACT
CCTATGTTGAACCCCTTCATCTACAGCCTTAGAAACAAGGATATGAAAGGGGCCCTAAAGAGGCTTCTAT
GTCATAGGAAATTTTTATCTTAA

Translation (310 aa):
MENESSVSEFFLQGISGFSEQQQLLYGLFLCMYLVTLTGNVLIILAIGSDPHLHTPMYFFLANLSFADMG
LISSTVTKMLFNVQTRCHTISYTGCLTQMYFFLMFGDLDSFLLAVMAYDRYVAICHPLHYSTIMSARVCA
LMLALCWVLTNIVALTHTLLMARLSFCVVGEIAHFFCDITPVLKLSCSDTHVNELMVFALGGTVLMVPFV
CIVISYIHIVFAILKVRTPGGGTKAFSTCSSHLCVVCVFYGTLFSAYLCPPSVVSTEKDVAAAAMYTVVT
PMLNPFIYSLRNKDMKGALKRLLCHRKFLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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