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Report for CCDS31545.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31545.2 Under review, update Homo sapiens 11 OR1S2 24 110 108 CCDS HistoryNCBI Gene:219958Re-query CCDS DB by CCDS ID:31545.2See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31545.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641683.2 ENSP00000493223.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641683.2Link to Ensembl Protein Viewer:ENSP00000493223.1Re-query CCDS DB by Nucleotide ID:ENST00000641683Re-query CCDS DB by Protein ID:ENSP00000493223
Original member Current member NCBI NM_001004459.2 NP_001004459.2 MANE Select Pending alive Link to Nucleotide Sequence:NM_001004459.2Link to Protein Sequence:NP_001004459.2Re-query CCDS DB by Nucleotide ID:NM_001004459Re-query CCDS DB by Protein ID:NP_001004459Link to BLAST:NP_001004459.2

Chromosomal Locations for CCDS 31545.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58203204 58204142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGCATCAAGAAAACCAAACCACCATCACTGAATTCATTCTCCTGGGACTCTCCAACCAGGCTGAACATC
AAAACCTCCTCTTTGTGCTTTTCCTGAGTATGTATGTGGTCACTGTGGTTGGGAACGGGCTCATCATTGT
GGCTATCAGCTTGGATATATACCTTCACACCCCCATGTATCTCTTCCTTGCCTACCTATCCTTTGCTGAT
ATTTCCTCCATTTCCAACTCAGTCCCCAAAATGCTGGTGAATATTCAAACCAACAGCCAATCCATCTCTT
ATGAGAGCTGCATCACACAGATGTACTTTTCTATTGTGTTTGTCGTCACTGACAATTTGCTTTTGGGGAC
CATGGCCTTCGACCACTTTGTGGCGATCTGCCACCCTCTGAACTATACAACTTTCATGCGGGCCAGGTTC
GGCACTTTGCTCACAGTCATCTCGTGGTTCCTCAGTAATATTATTGCTCTTACACACACCCTTCTGCTCA
TTCAATTGCTCTTCTGTGACCACAACACTCTCCCACACTTCTTCTGTGACTTGGCCCCTCTGCTCAAACT
GTCCTGTTCAGATACAATGATCAATGAGCTTGTGTTGTTTATTGTGGGTTTATCAGTTATCATCTTCCCC
TTTGTACTCATCTTCTTCTCCTATGTCTGCATCATCAGAGCTGTCCTGGGAGTATCATCCACACAGGGAA
AGTGGAAAGCCTTCTCCACTTGTGGCTCTCACCTGACAATTGCATTACTGTTCTACGGAACCACTGTAGG
CGTGTACTTTTTCCCCTCCTCCACTCACCCTGAGGACACTGATAAGATTGGTGCTGTCCTATTCACTGTG
GTGACACCCATGATGAACCCCTTCATCTACAGCTTGAGGAATAAGGATATGAAAGGTGCCCTGAGAAAGC
TCATCAATAGAAAAATTTCTTCCCTTTGA

Translation (312 aa):
MHQENQTTITEFILLGLSNQAEHQNLLFVLFLSMYVVTVVGNGLIIVAISLDIYLHTPMYLFLAYLSFAD
ISSISNSVPKMLVNIQTNSQSISYESCITQMYFSIVFVVTDNLLLGTMAFDHFVAICHPLNYTTFMRARF
GTLLTVISWFLSNIIALTHTLLLIQLLFCDHNTLPHFFCDLAPLLKLSCSDTMINELVLFIVGLSVIIFP
FVLIFFSYVCIIRAVLGVSSTQGKWKAFSTCGSHLTIALLFYGTTVGVYFFPSSTHPEDTDKIGAVLFTV
VTPMMNPFIYSLRNKDMKGALRKLINRKISSL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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