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Report for CCDS23813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23813.1 Public Mus musculus 10 Nr2e1 23 108 98 CCDS HistoryNCBI Gene:21907Re-query CCDS DB by CCDS ID:23813.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23813.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019938.10 ENSMUSP00000019938.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019938.10Link to Ensembl Protein Viewer:ENSMUSP00000019938.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019938Re-query CCDS DB by Protein ID:ENSMUSP00000019938
Original member Current member NCBI NM_152229.3 NP_689415.1 Accepted alive Link to Nucleotide Sequence:NM_152229.3Link to Protein Sequence:NP_689415.1Re-query CCDS DB by Nucleotide ID:NM_152229Re-query CCDS DB by Protein ID:NP_689415Link to BLAST:NP_689415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689415.1 385 Q64104 385 100% 0 0

Chromosomal Locations for CCDS 23813.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42563364 42563526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42567489 42567594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42567836 42567985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42568373 42568469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42571373 42571519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42572746 42572981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42574356 42574443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42578166 42578311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42582882 42582906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGAGCAAGCCCGCCGGATCAACAAGCCGCATTTTAGATATCCCTTGCAAAGTGTGTGGTGACCGCAGCT
CCGGGAAGCACTACGGGGTCTACGCTTGCGACGGCTGCTCCGGATTCTTCAAGAGGAGCATTCGAAGGAA
TAGGACCTATGTCTGCAAGTCTGGAAACCAGGGAGGATGCCCCGTAGACAAGACACACAGAAACCAATGC
AGGGCGTGTCGACTGAAGAAGTGTTTGGAAGTCAACATGAACAAAGATGCCGTGCAGCACGAGCGGGGTC
CTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACAAGGAAGACAATGGGGCCGC
TGCGCACTTCCCCTCCACGGCGCTGCCAGCCCCTGCTTTCTTCACAGCGGTCACGCAGCTGGAGCCGCAC
GGTCTGGAGTTGGCCGCTGTGTCTGCCACTCCTGAACGGCAGACTCTCGTGAGCCTGGCTCAGCCCACGC
CCAAGTATCCCCATGAAGTGAATGGGACCCCAATGTATCTCTACGAAGTGGCCACTGAGTCCGTGTGTGA
ATCAGCTGCCAGGCTTCTCTTTATGAGCATCAAGTGGGCAAAGAGTGTGCCAGCCTTTTCCACTTTGTCT
TTACAAGATCAGCTGATGCTTTTGGAAGACGCGTGGAGAGAACTGTTTGTTCTAGGAATAGCACAATGGG
CCATTCCGGTTGATGCTAACACTCTACTGGCTGTATCTGGCATGAATACTGACAACACAGACTCCCAGAA
GCTGAACAAGATCATATCTGAAATACAGGCTTTGCAAGAGGTGGTGGCTCGGTTCAGACAGCTCCGATTA
GACGCCACTGAATTTGCCTGTCTGAAATGTATTGTCACTTTCAAAGCTGTTCCTACACACAGTGGTTCTG
AACTGAGAAGTTTCCGGAATGCTGCCGCCATTGCCGCTCTCCAAGATGAGGCTCAGCTAACTCTCAACAG
CTACATTCATACCAGATACCCCACCCAACCCTGCCGATTCGGGAAACTCCTGTTGCTTTTACCAGCTTTA
CGGTCAATTAGCCCATCTACCATAGAAGAAGTGTTTTTCAAAAAAACCATCGGCAATGTGCCGATTACAA
GACTACTTTCAGATATGTACAAATCCAGTGACATCTAA

Translation (385 aa):
MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQC
RACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEDNGAAAHFPSTALPAPAFFTAVTQLEPH
GLELAAVSATPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
LQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARFRQLRL
DATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPAL
RSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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