NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49406.1 Public Mus musculus 14 Saysd1 23 108 98 CCDS HistoryNCBI Gene:67509Re-query CCDS DB by CCDS ID:49406.1Re-query CCDS DB by GeneID:67509See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059666.5 ENSMUSP00000055382.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059666.5Link to Ensembl Protein Viewer:ENSMUSP00000055382.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059666Re-query CCDS DB by Protein ID:ENSMUSP00000055382
Original member Current member NCBI NM_026209.1 NP_080485.1 Accepted alive Link to Nucleotide Sequence:NM_026209.1Link to Protein Sequence:NP_080485.1Re-query CCDS DB by Nucleotide ID:NM_026209Re-query CCDS DB by Protein ID:NP_080485Link to BLAST:NP_080485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080485.1 188 Q8K190 188 100% 0 0

Chromosomal Locations for CCDS 49406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20077288 20077644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20082878 20083087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGAACAGCGGTTAGCCGAGTTCCGGGAGGCCCGCAAACGGGCCAGTCTGGTAGCCCAGCCTTCCACGT
CCAGTCAGAGCGTACAGACCTCGGGAGCGAAGGCGGAGCCAGCGGCGGCGACCCCAAAGACAGCCACGGG
CTGGCTGACACGCTTCCTGAAACGGAAAGCCAACCCCGCCATCGCTCAGGCTCAGCCCAACCAGCCTCAG
GAAGCAGGCCAGCAGCTCCCTGAGAGCACAGCAGTCCCTCTGCCTTCCTCCTGCCGCCAGTCTTTCCTGA
CTAACATCACCTTCTTGAAGGTTCTCCTCTGGTTGGTCCTGCTGGGACTGTTTGTGGAACTGGAATTTGG
TCTGGCTTATTTTGTCCTGTCCATGTTCTATTGGATGTATGTAGGGACTCGGGGTCCCGAGGAGAAGAAA
GAAGGGGAGAAGAGCGCCTACTCTGTGTTCAACCCGGGCTGTGAAGCCATCCAGGGCACGCTGACTGCTG
AGCAGCTGGAGCAAGAGTTACAGCTCAGACCCCCTCAGGGAAGTAGGACCAGCCCCAGCTGTTCCTCCTA
TCCTTGA

Translation (188 aa):
MEQRLAEFREARKRASLVAQPSTSSQSVQTSGAKAEPAAATPKTATGWLTRFLKRKANPAIAQAQPNQPQ
EAGQQLPESTAVPLPSSCRQSFLTNITFLKVLLWLVLLGLFVELEFGLAYFVLSMFYWMYVGTRGPEEKK
EGEKSAYSVFNPGCEAIQGTLTAEQLEQELQLRPPQGSRTSPSCSSYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH