NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15318.1 Public Mus musculus 1 Timm17a 23 108 98 CCDS HistoryNCBI Gene:21854Re-query CCDS DB by CCDS ID:15318.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081104.9 ENSMUSP00000079883.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081104.9Link to Ensembl Protein Viewer:ENSMUSP00000079883.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000081104Re-query CCDS DB by Protein ID:ENSMUSP00000079883
Original member Current member NCBI NM_011590.2 NP_035720.1 Accepted alive Link to Nucleotide Sequence:NM_011590.2Link to Protein Sequence:NP_035720.1Re-query CCDS DB by Nucleotide ID:NM_011590Re-query CCDS DB by Protein ID:NP_035720Link to BLAST:NP_035720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035720.1 171 Q9Z0V8 171 100% 0 0

Chromosomal Locations for CCDS 15318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135301918 135302003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135304430 135304540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135306089 135306217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135309135 135309198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135309771 135309870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135313694 135313719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGGAGGAATACGCGAGAGAGCCGTGCCCCTGGCGAATTGTAGATGACTGTGGCGGTGCGTTTACCATGG
GCACCATAGGTGGTGGCATCTTCCAGGCCTTCAAAGGTTTTCGAAATTCTCCAGTGGGAATAAACCACAG
ACTCCGAGGAAGTTTGACAGCTATTAAAACCAGGGCTCCACAGTTGGGAGGTAGCTTTGCAGTTTGGGGA
GGACTGTTTTCCACGATTGACTGCAGTATGGTTCAAATACGAGGCAAAGAAGACCCCTGGAACTCCATCA
CTAGCGGTGCCTTAACAGGAGCCATCCTGGCAGCAAGAAATGGACCGGTAGCCATGGTTGGGTCCGCTGC
GATGGGCGGCATTCTCCTAGCTTTAATTGAAGGAGCTGGTATCTTGCTGACAAGATTTGCCTCTGCACAG
TTTCCCAATGGCCCTCAGTTCACTGAAGATCACTCCCAGTTGCCTTCCAGCCAGTTGCCATCCTCGCCGT
TTGGAGACTACCGACAGTATCAGTAG

Translation (171 aa):
MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWG
GLFSTIDCSMVQIRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQ
FPNGPQFTEDHSQLPSSQLPSSPFGDYRQYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH