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Report for CCDS37292.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37292.1 Public Mus musculus 16 Thpo 23 108 98 CCDS HistoryNCBI Gene:21832Re-query CCDS DB by CCDS ID:37292.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37292.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076422.12 ENSMUSP00000075756.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076422.12Link to Ensembl Protein Viewer:ENSMUSP00000075756.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076422Re-query CCDS DB by Protein ID:ENSMUSP00000075756
Original member Current member EBI ENSMUST00000115437.3 ENSMUSP00000111097.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115437.3Link to Ensembl Protein Viewer:ENSMUSP00000111097.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115437Re-query CCDS DB by Protein ID:ENSMUSP00000111097
Original member Current member NCBI NM_001173505.1 NP_001166976.1 Accepted alive Link to Nucleotide Sequence:NM_001173505.1Link to Protein Sequence:NP_001166976.1Re-query CCDS DB by Nucleotide ID:NM_001173505Re-query CCDS DB by Protein ID:NP_001166976Link to BLAST:NP_001166976.1
Original member Current member NCBI NM_009379.3 NP_033405.1 Accepted alive Link to Nucleotide Sequence:NM_009379.3Link to Protein Sequence:NP_033405.1Re-query CCDS DB by Nucleotide ID:NM_009379Re-query CCDS DB by Protein ID:NP_033405Link to BLAST:NP_033405.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166976.1 356 P40226-1 356 100% 0 0
NP_033405.1 356 P40226-1 356 100% 0 0

Chromosomal Locations for CCDS 37292.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20725408 20726082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20726306 20726473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20728382 20728468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20728719 20728846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20729064 20729076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGGAGCTGACTGATTTGCTCCTGGCGGCCATGCTTCTTGCAGTGGCAAGACTAACTCTGTCCAGCCCCG
TAGCTCCTGCCTGTGACCCCAGACTCCTAAATAAACTGCTGCGTGACTCCCACCTCCTTCACAGCCGACT
GAGTCAGTGTCCCGACGTCGACCCTTTGTCTATCCCTGTTCTGCTGCCTGCTGTGGACTTTAGCCTGGGA
GAATGGAAAACCCAGACGGAACAGAGCAAGGCACAGGACATTCTAGGGGCAGTGTCCCTTCTACTGGAGG
GAGTGATGGCAGCACGAGGACAGTTGGAACCCTCCTGCCTCTCATCCCTCCTGGGACAGCTTTCTGGGCA
GGTTCGCCTCCTCTTGGGGGCCCTGCAGGGCCTCCTAGGAACCCAGCTTCCTCTACAGGGCAGGACCACA
GCTCACAAGGACCCCAATGCCCTCTTCTTGAGCTTGCAACAACTGCTTCGGGGAAAGGTGCGCTTCCTGC
TTCTGGTAGAAGGTCCCACCCTCTGTGTCAGACGGACCCTGCCAACCACAGCTGTCCCAAGCAGTACTTC
TCAACTCCTCACACTAAACAAGTTCCCAAACAGGACTTCTGGATTGTTGGAGACGAACTTCAGTGTCACA
GCCAGAACTGCTGGCCCTGGACTTCTGAGCAGGCTTCAGGGATTCAGAGTCAAGATTACTCCTGGTCAGC
TAAATCAAACCTCCAGGTCCCCAGTCCAAATCTCTGGATACCTGAACAGGACACACGGACCTGTGAATGG
AACTCATGGGCTCTTTGCTGGAACCTCACTTCAGACCCTGGAAGCCTCAGACATCTCGCCCGGAGCTTTC
AACAAAGGCTCCCTGGCATTCAACCTCCAGGGTGGACTTCCTCCTTCTCCAAGCCTTGCTCCTGATGGAC
ACACACCCTTCCCTCCTTCACCTGCCTTGCCCACCACCCATGGATCTCCACCCCAGCTCCACCCCCTGTT
TCCTGACCCTTCCACCACCATGCCTAACTCTACCGCCCCTCATCCAGTCACAATGTACCCTCATCCCAGG
AATTTGTCTCAGGAAACATAG

Translation (356 aa):
MELTDLLLAAMLLAVARLTLSSPVAPACDPRLLNKLLRDSHLLHSRLSQCPDVDPLSIPVLLPAVDFSLG
EWKTQTEQSKAQDILGAVSLLLEGVMAARGQLEPSCLSSLLGQLSGQVRLLLGALQGLLGTQLPLQGRTT
AHKDPNALFLSLQQLLRGKVRFLLLVEGPTLCVRRTLPTTAVPSSTSQLLTLNKFPNRTSGLLETNFSVT
ARTAGPGLLSRLQGFRVKITPGQLNQTSRSPVQISGYLNRTHGPVNGTHGLFAGTSLQTLEASDISPGAF
NKGSLAFNLQGGLPPSPSLAPDGHTPFPPSPALPTTHGSPPQLHPLFPDPSTTMPNSTAPHPVTMYPHPR
NLSQET


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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