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Report for CCDS38240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38240.1 Public Mus musculus 2 Tgm3 23 108 98 CCDS HistoryNCBI Gene:21818Re-query CCDS DB by CCDS ID:38240.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38240.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110299.2 ENSMUSP00000105928.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110299.2Link to Ensembl Protein Viewer:ENSMUSP00000105928.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110299Re-query CCDS DB by Protein ID:ENSMUSP00000105928
Original member NCBI NM_009374.3 NP_033400.2 Updated not alive Link to Nucleotide Sequence:NM_009374.3Link to Protein Sequence:NP_033400.2Re-query CCDS DB by Nucleotide ID:NM_009374Re-query CCDS DB by Protein ID:NP_033400
Current member NCBI NM_009374.4 NP_033400.2 Accepted alive Link to Nucleotide Sequence:NM_009374.4Link to Protein Sequence:NP_033400.2Re-query CCDS DB by Nucleotide ID:NM_009374Re-query CCDS DB by Protein ID:NP_033400Link to BLAST:NP_033400.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033400.2 693 Q08189 693 100% 0 0

Chromosomal Locations for CCDS 38240.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130012403 130012409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130023689 130023862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130024345 130024584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130025258 130025376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130026685 130026813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130029625 130029802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130029901 130030036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130037473 130037576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130038363 130038608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130041757 130042065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130044503 130044660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130047688 130047821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130048253 130048400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGAGTGCTTTACAGATCCAAAACGTCAACTGGCAGGTGCCTATGAATCGAAGGGCGCATCACACAGACA
AGTTCTCCAGCCAGGATTCCATTGTGCGGAGAGGACAGCCCTGGGAGATAATATTAGTCTGCAACCGAAG
TCTTGAGTCTGGAGAAGATCTGAATTTCATTGTTTCCACAGGTCCCCAACCCTCTGAGTCAGCCAGGACA
AAGGCTGTATTTTCCATCTCTGGGAGAAGCACGGGTGGCTGGAATGCAGCGCTCAAAGCCAACAGTGGCA
ATAATCTGGCCATTGCTATTGCCAGTCCTGTCAGTGCTCCCATCGGATTGTACACACTGAGTGTTGAGAT
CTCCTCCAGGGGCAGGGCCTCCTCTCTGAAACTTGGCACGTTTATAATGCTCTTCAACCCGTGGTTGCAA
GCGGATGATGTCTTTATGAGTAACCACGCCGAAAGACAAGAGTATGTTGAAGAAGATTCTGGCATCATCT
ATGTGGGCAGCACAAATCGAATTGGCATGGTTGGCTGGAACTTTGGACAGTTTGAAGAAGACATTCTGAA
CATCAGCCTCTCCATTTTGGATAGGAGTCTGAATTTCCGTCGTGACCCTGTGACTGATGTGGCTCGCAGA
AATGACCCCAAATATGTTTGCCGGGTGCTGAGTGCCATGATTAATGGCAATGATGACAACGGTGTTATTT
CTGGGAACTGGAGTGGTAATTACACCGGTGGTGTGGACCCAAGGACCTGGAATGGTAGTGTGGAGATCCT
CAAGAACTGGAAAAAATCTGGCTTCAGGCCAGTCCAATTTGGCCAGTGCTGGGTCTTTGCTGGAACCCTC
AACACAGTGCTGCGGTGCTTGGGGGTTCCCTCTCGGGTGATCACCAACTTCAACTCGGCTCACGACACAG
ATCGAAACCTCAGTGTGGATGTGTACTACGATGCCATGGGAAATCCCCTGGAGAAAGGCAGTGATAGCGT
GTGGAATTTTCACGTCTGGAATGAAGGCTGGTTCGTGCGGACTGACCTAGGCCCCACATACAATGGATGG
CAGGTCCTGGATGCCACCCCCCAGGAGAGAAGTCAAGGTGTGTTCCAGTGCGGTCCAGCTTCCGTTAATG
CAATCAAAGCCGGTGATGTGGACCGGAATTTTGACATGATCTTCATCTTCGCGGAGGTTAATGCAGATCG
CATCACTTGGATCTATAATAATAGAAATAACACCCAGAAGCAGAATTCTGTGGACACTCACTCCATTGGC
AAATACATCAGCACCAAGGCAGTAGGCAGCAACTCTCGCATGGATGTCACAGACAAGTACAAGTATCCAG
AAGGTTCCAGTGAGGAAAGACAAGTGCACCAAAAGGCTTTGGACAAACTCAAACCTAACGCATCTTTCGG
CGCAACATCTTCGAGGAATCCAGAAGGGGAAGACAAGGAGCCCAGCATTTCTGGGAAGTTCAAGGTCACG
GGGATACTGGCAGTAGGCAAAGAAGTCAGTCTGTCCCTGATGCTCAAAAACATGACTAATGACAGGAAGA
CAGTGACGATGAACATGACAGCCTGGACCATCGTCTACAATGGTACCCTTGTCCACGAAGTGTGGAAGGA
CTCAGCCACAATATCCTTGGATCCTGAAGAAGAAATACAGTATCCTGTGAAGATCGCATACTCTCAGTAT
GAGAGATACCTGAAGGCAGACAACATGATCCGGATCACAGCTGTTTGCAAGGTGCCCGATGAGGCTGAGG
TGGTGGTGGAACGGGATGTCATCCTGGATAATCCTGCTTTGACCCTGGAGGTGCTGGAACAGGCTCATGT
GCGGAAGCCCGTGAACGTGCAGATGCTTTTCTCCAACCCCCTGGACCAGCCGGTGAATAACTGCGTGCTG
CTGGTGGAGGGCAGCGGCCTGCTGCGTGGCAGCCTCAAGATTGATGTGCCATCCCTGCGCCCCAAGGAGA
AGTCCCGCATCCGATTTGAGATTTTCCCCACTCGGAGTGGCACCAAGCAACTGCTCGCTGACTTTTCCTG
CAATAAATTCCCTGCAATCAAGGCCATGCTGCCCATTGATGTCTCTGAGTGA

Translation (693 aa):
MSALQIQNVNWQVPMNRRAHHTDKFSSQDSIVRRGQPWEIILVCNRSLESGEDLNFIVSTGPQPSESART
KAVFSISGRSTGGWNAALKANSGNNLAIAIASPVSAPIGLYTLSVEISSRGRASSLKLGTFIMLFNPWLQ
ADDVFMSNHAERQEYVEEDSGIIYVGSTNRIGMVGWNFGQFEEDILNISLSILDRSLNFRRDPVTDVARR
NDPKYVCRVLSAMINGNDDNGVISGNWSGNYTGGVDPRTWNGSVEILKNWKKSGFRPVQFGQCWVFAGTL
NTVLRCLGVPSRVITNFNSAHDTDRNLSVDVYYDAMGNPLEKGSDSVWNFHVWNEGWFVRTDLGPTYNGW
QVLDATPQERSQGVFQCGPASVNAIKAGDVDRNFDMIFIFAEVNADRITWIYNNRNNTQKQNSVDTHSIG
KYISTKAVGSNSRMDVTDKYKYPEGSSEERQVHQKALDKLKPNASFGATSSRNPEGEDKEPSISGKFKVT
GILAVGKEVSLSLMLKNMTNDRKTVTMNMTAWTIVYNGTLVHEVWKDSATISLDPEEEIQYPVKIAYSQY
ERYLKADNMIRITAVCKVPDEAEVVVERDVILDNPALTLEVLEQAHVRKPVNVQMLFSNPLDQPVNNCVL
LVEGSGLLRGSLKIDVPSLRPKEKSRIRFEIFPTRSGTKQLLADFSCNKFPAIKAMLPIDVSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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