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Report for CCDS26180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26180.1 Public Mus musculus 12 Eif5 23 108 98 CCDS HistoryNCBI Gene:217869Re-query CCDS DB by CCDS ID:26180.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050993.10 ENSMUSP00000061616.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050993.10Link to Ensembl Protein Viewer:ENSMUSP00000061616.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000050993Re-query CCDS DB by Protein ID:ENSMUSP00000061616
Original member Current member EBI ENSMUST00000166123.8 ENSMUSP00000126825.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166123.8Link to Ensembl Protein Viewer:ENSMUSP00000126825.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166123Re-query CCDS DB by Protein ID:ENSMUSP00000126825
Original member Current member EBI ENSMUST00000222375.1 ENSMUSP00000152791.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000222375.1Link to Ensembl Protein Viewer:ENSMUSP00000152791.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000222375Re-query CCDS DB by Protein ID:ENSMUSP00000152791
Original member Current member NCBI NM_173363.5 NP_775539.1 Accepted alive Link to Nucleotide Sequence:NM_173363.5Link to Protein Sequence:NP_775539.1Re-query CCDS DB by Nucleotide ID:NM_173363Re-query CCDS DB by Protein ID:NP_775539Link to BLAST:NP_775539.1
Original member Current member NCBI NM_178041.2 NP_829887.1 Accepted alive Link to Nucleotide Sequence:NM_178041.2Link to Protein Sequence:NP_829887.1Re-query CCDS DB by Nucleotide ID:NM_178041Re-query CCDS DB by Protein ID:NP_829887Link to BLAST:NP_829887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775539.1 429 P59325 429 100% 0 0
NP_829887.1 429 P59325 429 100% 0 0

Chromosomal Locations for CCDS 26180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111539616 111539687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111539801 111539882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111540130 111540302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111540461 111540572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111541706 111541845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111542152 111542310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111542680 111542841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111543100 111543264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111543527 111543661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111544529 111544618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTCTGTCAACGTCAACCGCAGCGTGTCAGACCAGTTCTATCGCTACAAGATGCCCCGTTTGATTGCTA
AGGTTGAGGGCAAAGGAAATGGAATCAAGACAGTTATAGTCAACATGGTTGACGTTGCAAAGGCGCTTAA
TCGGCCTCCAACGTATCCCACCAAATATTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGTTAAG
AATGACCGTTACATTGTCAATGGATCTCATGAGGCGAATAAGCTGCAAGACATGTTGGATGGATTCATTA
AAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAACAGATCTGCATGTCAATCCAAAGAAGCAAAC
AATAGGTAATTCTTGTAAAGCCTGTGGGTACCGAGGCATGCTTGACACACATCATAAACTCTGTACATTC
ATTCTCAAAAACCCACCTGAGAATAGTGACATTGGTACAGGAAAGAAAGAAAAGGAAAAGAAAAATAGAA
AGGGCAAGGACAAGGAAAATGGCTCTGTATCTACCAGTGAGACACCACCACCTCCACCACCAAATGAAAT
TAGTCCTCCACATGCTGTGGAAGAAGAGGAAGATGATGATTGGGGGGAGGATACAACTGAGGAAGCTCAA
AGGCGCAGAATGGATGAAATCAGTGACCATGCAAAAGGTCTGACACTTAGTGATGATTTGGAAAGAACTG
TAGAAGAGCGTGTTAACATCCTGTTTGATTTTGTTAAGAAAAAGAAAGAAGAGGGCATTATTGATTCATC
TGATAAAGAAATTGTGGCTGAGGCAGAAAGACTGGATGTAAAAGCCATGGGTCCTCTTGTTTTGACAGAA
GTTCTCTTTGATGAGAAGATAAGAGAGCAAATCAAGAAATACAGGCGCCATTTTCTAAGATTTTGTCATA
ACAACAAAAAGGCTCAGCGGTACCTTCTTCATGGTTTGGAATGTGTGGTAGCAATGCATCAAGCTCAGCT
GATCTCCAAGATCCCACACATCCTGAAGGAGATGTATGATGCCGACCTGTTAGAGGAGGAGGTCATTATC
AGCTGGTCAGAAAAGGCCTCTAAGAAATATGTCTCAAAAGAACTTGCCAAAGAGATTCGTGTCAAAGCAG
AGCCATTTATTAAATGGTTGAAGGAAGCAGAGGAAGAATCTTCTGGTGGTGAGGAAGAAGATGAAGACGA
AAATATTGAGGTCGTATATTCGAAAACTGCCAGTGTACCAAAAGTTGAAACTGTGAAGTCTGACAACAAG
GATGATGACATTGATATTGACGCCATTTAA

Translation (429 aa):
MSVNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK
NDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTF
ILKNPPENSDIGTGKKEKEKKNRKGKDKENGSVSTSETPPPPPPNEISPPHAVEEEEDDDWGEDTTEEAQ
RRRMDEISDHAKGLTLSDDLERTVEERVNILFDFVKKKKEEGIIDSSDKEIVAEAERLDVKAMGPLVLTE
VLFDEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVII
SWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKTASVPKVETVKSDNK
DDDIDIDAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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