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Report for CCDS26044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26044.1 Public Mus musculus 12 Coq6 23 108 98 CCDS HistoryNCBI Gene:217707Re-query CCDS DB by CCDS ID:26044.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021661.12 ENSMUSP00000021661.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021661.12Link to Ensembl Protein Viewer:ENSMUSP00000021661.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021661Re-query CCDS DB by Protein ID:ENSMUSP00000021661
Original member Current member EBI ENSMUST00000110276.7 ENSMUSP00000105905.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110276.7Link to Ensembl Protein Viewer:ENSMUSP00000105905.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110276Re-query CCDS DB by Protein ID:ENSMUSP00000105905
Original member Current member NCBI NM_172582.3 NP_766170.2 Accepted alive Link to Nucleotide Sequence:NM_172582.3Link to Protein Sequence:NP_766170.2Re-query CCDS DB by Nucleotide ID:NM_172582Re-query CCDS DB by Protein ID:NP_766170Link to BLAST:NP_766170.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766170.2 476 Q8R1S0 476 100% 0 0

Chromosomal Locations for CCDS 26044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84362051 84362237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84366885 84367019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84368143 84368201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84368586 84368709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84370256 84370386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84370924 84371031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84371108 84371170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84371451 84371558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84372139 84372341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84372419 84372534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84372651 84372817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84373679 84373708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGCGGCCCGCATTGGCTCCATGGCAGGCTTGCTCTGCGTTCGCTGGTGGAGTTCCGCGCAGCTCGCAG
CCAGAGGAGGCCCGCTAGTTGCCAGCCAGCGATGGGCGGGCTCCTCGGCAGACACCGTGTACGACGTGGT
GGTGTCAGGAGGAGGCCTAGTGGGCTCTGCCATGGCTTGTGCCTTAGGACATGATATTCACTTTCATGAC
AAGAAAATCCTGTTGCTGGAGGCGGGTCCAAAGAAAGCCCTGGAGAAACTGTCAGAGACTTACAGCAACA
GAGTCAGCTCCATATCCCCTGGCTCCACAACCCTGCTCAGCAGTTTTGGTGCATGGGACCACATCTGCAA
TATGCGCTGCAAAGCCTTCCGGAGGATGCAGGTGTGGGACTCCTGCTCAGAGGCCTTGATAATGTTCGAC
AGGGACAACCTGGATGACATGGGCTATATAGTGGAAAATGACGTCATCATGTATGCCCTCACCAAACAGC
TGGAGGCTGTGGCAGATCGAGTGAAGGTTCTCTATGAGAGCAAAGCTGTTGGCTATTCCTGGCCTGGTGC
ATTTTCCATGGCAGACTCCAGCCCTTGGGTCCATATTACCCTAGGTGATGGCAGTACCCTCCAGACCAAA
CTGTTGATTGGTGCTGATGGGCACAAGTCAGGAGTGAGGCAAGCTGCTGGGATCCAGAATGTCAGCTGGA
AGTACGACCAGTCTGCTGTGGTGGCCACTCTCCACTTATCAGAGGCCACAGAAAACAATGTAGCCTGGCA
GAGATTTCTTCCCTCTGGGCCTATTGCTCTGCTCCCGCTCTCGGATACCTTGAGCTCCTTGGTCTGGTCC
ACATCACACGAGCATGCAGCAGAGCTGGTCAGCATGGATGAGGAAGAATTCGTGGATGCCATCAACTCTG
CCTTTTGGAGTGATGTTCACCACACAGACTTCGTCGACTCTGCCAGCGCCATGGTGCGCCATGCTGTCGC
CCTTCTGAAGCCCACTAAGGTCTCAGCCCGTCAGCTGCCCCCAAGTATAGCCAAGGTGGATGCTAAAAGC
AGAGCCCTCTTTCCTCTGGGGCTGGGACATGCTGCTGAGTACGTCCGGCCTCGGGTGGCCCTCATTGGTG
ATGCAGCCCACAGAATCCATCCACTCGCGGGACAAGGTGTCAACATGGGCTTCGGGGATATTTCCAGCTT
GGTTCATCATCTCAGTACAGCAGCCTTCAATGGGAAGGACTTAGGCTCCATGAGCCACCTCACAGGTTAT
GAGACAGACAGACAGCGTCATAACACTGCTCTCCTGGCTGCTACTGACCTGTTGAAAAGGCTCTACTCTA
CCAGTGCCACTCCCCTCGTGCTGCTCAGGACCTGGGGCTTGCAGGCCACGAACGCAGTGTCTCCTCTCAA
AGAACAGATTATGGCCTTTGCGAGCAAATGA

Translation (476 aa):
MAARIGSMAGLLCVRWWSSAQLAARGGPLVASQRWAGSSADTVYDVVVSGGGLVGSAMACALGHDIHFHD
KKILLLEAGPKKALEKLSETYSNRVSSISPGSTTLLSSFGAWDHICNMRCKAFRRMQVWDSCSEALIMFD
RDNLDDMGYIVENDVIMYALTKQLEAVADRVKVLYESKAVGYSWPGAFSMADSSPWVHITLGDGSTLQTK
LLIGADGHKSGVRQAAGIQNVSWKYDQSAVVATLHLSEATENNVAWQRFLPSGPIALLPLSDTLSSLVWS
TSHEHAAELVSMDEEEFVDAINSAFWSDVHHTDFVDSASAMVRHAVALLKPTKVSARQLPPSIAKVDAKS
RALFPLGLGHAAEYVRPRVALIGDAAHRIHPLAGQGVNMGFGDISSLVHHLSTAAFNGKDLGSMSHLTGY
ETDRQRHNTALLAATDLLKRLYSTSATPLVLLRTWGLQATNAVSPLKEQIMAFASK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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