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Report for CCDS20285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20285.1 Public Mus musculus 6 Tex261 23 108 98 CCDS HistoryNCBI Gene:21766Re-query CCDS DB by CCDS ID:20285.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20285.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014892.7 ENSMUSP00000014892.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014892.7Link to Ensembl Protein Viewer:ENSMUSP00000014892.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000014892Re-query CCDS DB by Protein ID:ENSMUSP00000014892
Original member Current member NCBI NM_009357.2 NP_033383.1 Accepted alive Link to Nucleotide Sequence:NM_009357.2Link to Protein Sequence:NP_033383.1Re-query CCDS DB by Nucleotide ID:NM_009357Re-query CCDS DB by Protein ID:NP_033383Link to BLAST:NP_033383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033383.1 196 Q62302 196 100% 0 0

Chromosomal Locations for CCDS 20285.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83771188 83771303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83771447 83771549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83772242 83772309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83773710 83773863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83775018 83775097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83775654 83775723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGTGGTTCATGTACGTGCTGAGCTGGCTGTCGCTGTTCATCCAGGTGGCATTCATCACTCTGGCCGTCG
CGGCTGGACTGTACTACCTTGCAGAGCTGATAGAAGAGTACACGGTGGCCACCAGCCGAATCATCAAATA
CATGATCTGGTTCTCCACAGCAGTGCTGATCGGCCTCTACGTCTTTGAGCGTTTCCCCACCAGCATGATT
GGCGTGGGCCTTTTCACCAACCTCGTCTACTTTGGCCTTCTCCAGACCTTCCCCTTCATCATGCTGACGT
CACCTAACTTCATCCTGTCATGCGGGCTAGTGGTGGTGAATCATTACCTGGCATTTCAGTTTTTTGCGGA
AGAGTATTATCCTTTCTCTGAGGTCCTGGCCTACTTCACATTCTGCCTGTGGATAATCCCGTTTGCTTTC
TTCGTGTCACTTTCGGCTGGGGAGAATGTCCTGCCCTCCACCATGCAGCCAGGCGATGACGTGGTCTCCA
ATTACTTCACCAAAGGCAAGCGAGGCAAGCGCTTAGGCATCCTGGTTGTCTTCTCCTTCATCAAAGAGGC
CATCCTACCCAGTCGGCAGAAGATATACTGA

Translation (196 aa):
MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMI
GVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAF
FVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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