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Report for CCDS28053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28053.1 Public Mus musculus 16 Psmd2 23 108 98 CCDS HistoryNCBI Gene:21762Re-query CCDS DB by CCDS ID:28053.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28053.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007212.8 ENSMUSP00000007212.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007212.8Link to Ensembl Protein Viewer:ENSMUSP00000007212.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007212Re-query CCDS DB by Protein ID:ENSMUSP00000007212
Original member Current member NCBI NM_134101.2 NP_598862.1 Accepted alive Link to Nucleotide Sequence:NM_134101.2Link to Protein Sequence:NP_598862.1Re-query CCDS DB by Nucleotide ID:NM_134101Re-query CCDS DB by Protein ID:NP_598862Link to BLAST:NP_598862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598862.1 908 Q8VDM4 908 100% 0 0

Chromosomal Locations for CCDS 28053.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20651717 20651851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20652244 20652300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20652593 20652757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20654548 20654669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20654818 20655042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20655253 20655411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20655559 20655703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20655881 20655941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20656543 20656689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20656868 20656974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20657482 20657609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20657974 20658061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20659406 20659568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20659679 20659780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20659957 20660102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20660343 20660426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20661565 20661733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20661816 20661910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20662093 20662219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20662622 20662740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20663063 20663245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2727 nt):
ATGGAGGAGGGTGGACGAGACAAGACACCCGTGCAGTCCCAACAGCCCTCCGCGACAACCCCCAGCGGCG
CGGACGAGAAGTCGAGTGGCAAGGAGCGAAGGGATGCCGGGGAAAAAGACAAAGAGCAGGAGCTGTCTGA
GGAGGACAAACAGCTTCAAGATGAACTGGAGATGCTCGTGGAGCGACTCGGGGAGAAAGATACATCTCTA
TATCGACCAGCTCTGGAGGAACTGAGAAGACAAATTCGTTCTTCTACAACTTCCATGACTTCAGTACCCA
AGCCTCTCAAATTTCTGCGTCCACACTATGGCAAATTGAAGGAAATCTATGAGAACATGGCCCCTGGGGA
GAATAAGTGTTTTGCAGCTGACATCATCTCTGTTTTGGCCATGACCATGAGTGGTGAGCGGGAGTGCCTC
AAGTATCGGCTCGTGGGCTCCCAGGAAGAACTGGCGTCATGGGGCCATGAATACGTCAGACATCTGGCAG
GAGAGGTGGCCAAGGAGTGGCAGGAGCTGGATGATGCAGAGAAAGCACAGCGGGAACCACTGCTTACCTT
GGTAAAGGAAATCGTCCCCTACAACATGGCTCACAATGCAGAGCACGAGGCTTGTGACCTGCTCATGGAA
ATTGAGCAGGTGGACATGCTAGAGAAGGACATTGATGAGAACGCCTACGCCAAGGTCTGCCTCTATCTCA
CCAGTTGTGTGAATTATGTACCAGAACCTGAGAACTCTGCCCTCCTGCGCTGCGCCTTGGGCGTGTTCCG
AAAGTTTAGCCGTTTCCCTGAAGCTCTGAGATTGGCACTGATGCTCAATGACATGGAACTGGTAGAAGAC
ATTTTCACTTCCTGCAAAGATGTGGTGGTCCAGAAGCAGATGGCATTCATGCTGGGTCGGCATGGAGTGT
TCCTGGAGCTGAGTGAAGATGTAGAGGAATATGAAGACCTCACAGAAATCATGTCCAATGTCCAGCTCAA
CAGCAACTTCTTGGCTTTAGCTCGGGAGCTGGACATCATGGAGCCCAAGGTGCCTGATGACATCTACAAA
ACCCACCTAGAGAATAACAGGTTTGGTGGCAGTGGCTCTCAAGTGGATTCTGCACGAATGAACCTAGCCT
CCTCTTTTGTAAATGGCTTTGTGAATGCAGCCTTTGGTCAAGATAAACTACTGACTGATGATGGCAACAA
ATGGCTTTACAAGAACAAGGACCATGGGATGCTAAGTGCTGCTGCGTCTCTTGGCATGATTCTGCTGTGG
GATGTGGATGGTGGCCTCACCCAGATTGACAAGTATCTGTACTCCTCTGAGGACTACATCAAGTCAGGAG
CTCTCCTTGCCTGTGGTATCGTGAATTCTGGAGTCCGGAATGAGTGTGATCCTGCCCTGGCACTGCTTTC
AGACTATGTTCTCCATAACAGCAATACCATGAGACTTGGCTCCATCTTTGGGCTAGGTTTGGCCTATGCT
GGCTCTAATCGGGAAGATGTTCTAACACTGCTGCTACCTGTAATGGGAGATTCCAAGTCCAGCATGGAGG
TGGCAGGTGTGACGGCTCTAGCTTGTGGGATGATAGCAGTGGGGTCCTGCAATGGAGATGTCACTTCCAC
CATCCTTCAGACCATCATGGAGAAATCTGAGACTGAGCTCAAGGATACCTATGCTCGTTGGCTTCCTCTT
GGCCTGGGCCTCAATCACTTGGGGAAAGGCGAAGCTATTGAGGCCATCCTGGCTGCCTTGGAGGTGGTGT
CAGAGCCATTCCGCAGTTTTGCCAATACCCTGGTGGATGTATGTGCCTATGCAGGCTCTGGGAATGTGCT
GAAGGTTCAGCAGCTCCTCCACATCTGTAGTGAGCACTTTGACTCTAAGGAAAAGGAGGAAGACAAAGAC
AAGAAGGAAAAGAAGGACAAGGACAAGAAGGAAGCCCCTGCTGACATGGGAGCACATCAGGGAGTAGCTG
TTCTGGGCATTGCACTTATTGCTATGGGGGAAGAGATTGGTGCAGAGATGGCATTGCGAACTTTTGGTCA
CTTGCTGAGATATGGGGAGCCTACCCTCCGTCGCGCTGTACCTTTAGCACTGGCACTAATTTCTGTTTCA
AATCCACGACTCAACATCCTGGATACGCTAAGCAAATTCTCTCATGATGCTGATCCAGAAGTTTCCTATA
ACTCCATCTTTGCTATGGGCATGGTGGGCAGTGGTACCAATAATGCCCGTCTGGCTGCAATGTTGCGCCA
GTTAGCTCAATATCATGCCAAGGACCCCAATAACCTCTTCATGGTGCGCTTGGCACAGGGCTTGACACAT
TTAGGGAAGGGCACACTTACCCTCTGCCCCTATCACAGTGATCGGCAGCTCATGAGTCAAGTAGCGGTGG
CAGGGCTACTCACGGTGCTTGTTTCTTTCCTGGATGTTCGAAACATCATCCTAGGCAAGTCTCACTATGT
CCTGTATGGGCTGGTAGCCGCCATGCAGCCTCGGATGCTGGTTACATTTGATGAGGAGCTGCGACCATTG
CCAGTTTCTGTCCGTGTGGGTCAGGCAGTGGATGTGGTGGGCCAGGCTGGGAAGCCAAAAACAATCACAG
GGTTCCAGACTCATACAACGCCAGTGTTGCTGGCCCATGGGGAGCGGGCAGAGTTGGCCACTGAGGAGTT
TCTTCCTGTCACCCCCATTCTGGAAGGCTTTGTTATTCTTCGGAAGAACCCCAACTATGATCTTTGA

Translation (908 aa):
MEEGGRDKTPVQSQQPSATTPSGADEKSSGKERRDAGEKDKEQELSEEDKQLQDELEMLVERLGEKDTSL
YRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKCFAADIISVLAMTMSGERECL
KYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKAQREPLLTLVKEIVPYNMAHNAEHEACDLLME
IEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVED
IFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYK
THLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLGSIFGLGLAYA
GSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQTIMEKSETELKDTYARWLPL
GLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAYAGSGNVLKVQQLLHICSEHFDSKEKEEDKD
KKEKKDKDKKEAPADMGAHQGVAVLGIALIAMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVS
NPRLNILDTLSKFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTH
LGKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPL
PVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTPILEGFVILRKNPNYDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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