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Report for CCDS16069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16069.1 Public Mus musculus 2 Gca 23 108 98 CCDS HistoryNCBI Gene:227960Re-query CCDS DB by CCDS ID:16069.1Re-query CCDS DB by GeneID:227960See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028257.2 ENSMUSP00000028257.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028257.2Link to Ensembl Protein Viewer:ENSMUSP00000028257.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028257Re-query CCDS DB by Protein ID:ENSMUSP00000028257
Original member Current member NCBI NM_145523.3 NP_663498.1 Accepted alive Link to Nucleotide Sequence:NM_145523.3Link to Protein Sequence:NP_663498.1Re-query CCDS DB by Nucleotide ID:NM_145523Re-query CCDS DB by Protein ID:NP_663498Link to BLAST:NP_663498.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663498.1 220 Q8VC88 220 100% 0 0

Chromosomal Locations for CCDS 16069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 62664433 62664459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62672277 62672450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62679156 62679225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62685965 62686008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62686277 62686424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62689961 62690074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62690391 62690449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 62691564 62691590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGCCTACCCGGGATACGGAGGGGCGTTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCAAATGCAGA
TGGGCCAGCCAATGCCAGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGATACCTGGGTTATTC
TGACAGCTACTCCCCTGCCGACGACTCCATGTGGACTTATTTCACAGCTGTTGCTGGTCAGGATGGTGAG
GTGGATGCTGAGGAACTGCAGAGATGCTTGACCCAGTCTGGAATTAGTGGAACTTACGCACCTTTCAGTT
TGGAAACCTGCAGAATTATGATTGCCATGTTGGATAGAGACTACACAGGAAAAATGGGGTTCAACGAATT
CAAGGAGCTTTGGGCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACCAAGATCAAAGTGGC
ACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGGGCTACAGGTTGAGTCCACAGACATTAG
CTGCAATTGTCAGACGCTACAGCAAGAATGGCCGGATTTTCTTTGATGACTATGTTGCCTGCTGTGTGAA
GCTGCGCGCCCTGACAGATTTCTTTAGGCGAAGAGACCACTTGCAACAAGGGATTGTGAATTTCATGTAT
GAAGATTTTTTGCAGGGCACTATGACAATTTGA

Translation (220 aa):
MAYPGYGGAFGNFSGQIPGMQMQMGQPMPGAGPNMFSGGYPGYLGYSDSYSPADDSMWTYFTAVAGQDGE
VDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWKQNFMTIDQDQSG
TVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNGRIFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMY
EDFLQGTMTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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