NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS53171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53171.1 Public Mus musculus X Chmp1b2 23 108 98 CCDS HistoryNCBI Gene:67028Re-query CCDS DB by CCDS ID:53171.1Re-query CCDS DB by GeneID:67028See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120722.1 ENSMUSP00000113588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120722.1Link to Ensembl Protein Viewer:ENSMUSP00000113588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120722Re-query CCDS DB by Protein ID:ENSMUSP00000113588
Original member Current member NCBI NM_025921.3 NP_080197.2 Accepted alive Link to Nucleotide Sequence:NM_025921.3Link to Protein Sequence:NP_080197.2Re-query CCDS DB by Nucleotide ID:NM_025921Re-query CCDS DB by Protein ID:NP_080197Link to BLAST:NP_080197.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080197.2 199 Q9CQD4 199 100% 0 0

Chromosomal Locations for CCDS 53171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107787809 107787853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107788266 107788338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107790736 107790779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107792899 107793006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107793093 107793161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107793508 107793654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107807792 107807889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107816135 107816150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGTCGAACATGGAGAAACACTTATTTAACTTGAAGTTTGCTGCAAAAGAACTTAATAGGAATGCCAAGA
AGTGTGATAAAGAAGAAAAAGCTGAAAAGGCCAAGATAAAAAAGGCCATTCAGAAGGGCAATACAGAAGT
TGCAAGAATACATGCTGAAAATGCAATCCGTCAGAAAAACCAAGCAATCAATTTCTTGAGAATGAGTGCT
AGGGTTGATGCTGTGGCAGCCAGAGTTCAAACTGCAGTAACAATGGGCAAGGTGACAAAATCCATGGCAG
GTGTAGTTAAATCTATGGATGCTACATTGAGGAGTATGAACCTTGAGAAGATTTCTGCCTTAATGGACAA
ATTTGAACATCAGTTTGAAACATTGGATGTTCAGACACAGCAAATGGAAGATACAATGAGTAGCACTACT
ACCCTTACGACACCACAGAACCAAGTGGATATGCTGCTCCAGGAAATGGCAGATGAAGCTGGCCTCGATC
TCAATATGGAACTACCACAGGGTCAGACAGGGTCTGTTGGTGCAAGTGTTGCTTCTACAGAGCAGGATGA
ACTGTCACAGAGGCTTGCTCGTCTTCGTGATCAAGTGTAA

Translation (199 aa):
MSNMEKHLFNLKFAAKELNRNAKKCDKEEKAEKAKIKKAIQKGNTEVARIHAENAIRQKNQAINFLRMSA
RVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTT
TLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGASVASTEQDELSQRLARLRDQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH