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Report for CCDS20215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20215.1 Public Mus musculus 6 Vmn1r37 23 108 98 CCDS HistoryNCBI Gene:171183Re-query CCDS DB by CCDS ID:20215.1Re-query CCDS DB by GeneID:171183See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077482.1 ENSMUSP00000076691.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077482.1Link to Ensembl Protein Viewer:ENSMUSP00000076691.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000077482Re-query CCDS DB by Protein ID:ENSMUSP00000076691
Original member Current member EBI ENSMUST00000227923.1 ENSMUSP00000154109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227923.1Link to Ensembl Protein Viewer:ENSMUSP00000154109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227923Re-query CCDS DB by Protein ID:ENSMUSP00000154109
Original member Current member EBI ENSMUST00000226974.1 ENSMUSP00000154344.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226974.1Link to Ensembl Protein Viewer:ENSMUSP00000154344.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226974Re-query CCDS DB by Protein ID:ENSMUSP00000154344
Original member Current member NCBI NM_134165.1 NP_598926.1 Accepted alive Link to Nucleotide Sequence:NM_134165.1Link to Protein Sequence:NP_598926.1Re-query CCDS DB by Nucleotide ID:NM_134165Re-query CCDS DB by Protein ID:NP_598926Link to BLAST:NP_598926.1

Chromosomal Locations for CCDS 20215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 66731392 66732300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTTTTCATTAAATAATATCCTTAATTTTCAAACTGGGCTTGGAGCTATAGCCAATATATTTCTTCTTT
TTTTCTACACTATGATAATCCTGTGTCACAGATCTAAGCCCATGGACATGATCTCCTTTCAGTTGACCTT
CATTCACATAATGATGTTTCTCACTGGAGGGCATGCTTGGCTTAAAGATTTCTTAGGGTCATTGAACATT
GGCAATGACTTCATATGTAAGGCAACTGCTTACATAAACAGAGTGATGAGAGGCCTCTCTATCTGCATCA
CCTGCCTCCTGAGTGTGTTCCAGGCTGTGACGATCAGTCCCAATACCTCTTTGTTGGCAAAATTTAAACA
TAAACTAAAAAAATACATGATCTATTCTTTCTTCTATTTTTGGTCTTTCAATTTGTCATTCAGCATTAAC
CGGATCATCTATACTGGCGCTTATACCAATGTGAGTGAGACCAACCAGCTGAAGGTGACTAAATCCTGCT
CACTCTTCCCCATGAACTACATCATCAGGGGACTGATTTTAACCATGACAACCTTAAGAGATGTGTTTCT
TGTAGGAGTCATGCTGACTATGAGCACATACATGGTGATTATCTTGTTCAGACATCAGAGGCAATGCAAG
CATCTTCATAGCATCAACCACCTGAGAGCCTCCCCTGAGAAAAGGGCCACTCAGACCATCTTGCTGCTGG
TGGTTTTCTTTGTGGTCATGTACTGGGTGGACTTCATCATCTCGTCCTCCTCAGTCCTGTTATGGATGTA
TGACTCGGTCATCCTGACTGTTCAGAAGTTTGTCATGAATGTCTATCCCACAATTACTCCTTTGGTACAA
ATCAGTTCTGATAAGCGAATAATCATTATACTAAAAAGTATGCAAAAATTATGGCACCAGATTTTTTAA

Translation (302 aa):
MFSLNNILNFQTGLGAIANIFLLFFYTMIILCHRSKPMDMISFQLTFIHIMMFLTGGHAWLKDFLGSLNI
GNDFICKATAYINRVMRGLSICITCLLSVFQAVTISPNTSLLAKFKHKLKKYMIYSFFYFWSFNLSFSIN
RIIYTGAYTNVSETNQLKVTKSCSLFPMNYIIRGLILTMTTLRDVFLVGVMLTMSTYMVIILFRHQRQCK
HLHSINHLRASPEKRATQTILLLVVFFVVMYWVDFIISSSSVLLWMYDSVILTVQKFVMNVYPTITPLVQ
ISSDKRIIIILKSMQKLWHQIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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