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Report for CCDS532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
532.1 Public Homo sapiens 1 RAD54L 24 110 108 CCDS HistoryNCBI Gene:8438Re-query CCDS DB by CCDS ID:532.1Re-query CCDS DB by GeneID:8438See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371975.9 ENSP00000361043.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371975.9Link to Ensembl Protein Viewer:ENSP00000361043.4Re-query CCDS DB by Nucleotide ID:ENST00000371975Re-query CCDS DB by Protein ID:ENSP00000361043
Original member Current member EBI ENST00000442598.5 ENSP00000396113.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442598.5Link to Ensembl Protein Viewer:ENSP00000396113.1Re-query CCDS DB by Nucleotide ID:ENST00000442598Re-query CCDS DB by Protein ID:ENSP00000396113
Original member Current member EBI ENST00000671528.1 ENSP00000499652.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000671528.1Link to Ensembl Protein Viewer:ENSP00000499652.1Re-query CCDS DB by Nucleotide ID:ENST00000671528Re-query CCDS DB by Protein ID:ENSP00000499652
Original member Current member NCBI NM_001142548.2 NP_001136020.1 Accepted alive Link to Nucleotide Sequence:NM_001142548.2Link to Protein Sequence:NP_001136020.1Re-query CCDS DB by Nucleotide ID:NM_001142548Re-query CCDS DB by Protein ID:NP_001136020Link to BLAST:NP_001136020.1
Original member Current member NCBI NM_003579.4 NP_003570.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003579.4Link to Protein Sequence:NP_003570.2Re-query CCDS DB by Nucleotide ID:NM_003579Re-query CCDS DB by Protein ID:NP_003570Link to BLAST:NP_003570.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136020.1 747 Q92698 747 100% 0 0
NP_003570.2 747 Q92698 747 100% 0 0

Chromosomal Locations for CCDS 532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46248406 46248408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46248512 46248598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46250000 46250119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46258686 46258746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46259964 46260099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46260542 46260611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46260727 46261015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46261261 46261385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46267459 46267609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46270659 46270785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46272466 46272540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46272672 46272802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46273355 46273465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46273624 46273747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46274138 46274216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46274538 46274717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46277817 46277980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46278072 46278282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGAGGAGGAGCTTGGCTCCCAGCCAGCTGGCCAAGAGAAAACCTGAAGGCAGGTCCTGTGATGATGAAG
ACTGGCAACCTGGCCTAGTGACTCCTAGGAAACGGAAATCCAGCAGTGAGACCCAGATCCAGGAGTGTTT
CCTGTCTCCTTTTCGGAAACCTTTGAGTCAGCTAACCAATCAACCACCTTGTCTGGACAGCAGTCAGCAT
GAAGCATTTATTCGAAGCATTTTGTCAAAGCCTTTCAAAGTCCCCATTCCAAATTATCAAGGTCCTCTGG
GCTCTCGAGCATTGGGCCTGAAAAGGGCTGGGGTCCGCCGGGCCCTCCATGACCCCCTGGAAAAAGATGC
CTTGGTTCTGTATGAGCCTCCCCCGCTGAGCGCTCATGACCAGCTGAAGCTTGACAAGGAGAAACTCCCT
GTCCATGTGGTTGTTGACCCTATTCTCAGTAAGGTTTTGCGGCCTCATCAGAGAGAGGGAGTGAAATTCC
TGTGGGAGTGTGTCACCAGTCGGCGCATCCCTGGCAGCCATGGCTGCATCATGGCTGATGAGATGGGCCT
AGGAAAGACGCTGCAGTGCATCACATTGATGTGGACACTTTTACGCCAGAGTCCAGAGTGCAAGCCAGAA
ATTGACAAGGCAGTGGTGGTGTCGCCTTCCAGCCTGGTGAAGAACTGGTACAATGAGGTTGGGAAATGGC
TCGGAGGGAGGATCCAACCTCTGGCCATCGATGGAGGATCTAAGGATGAAATAGACCAAAAGCTGGAAGG
ATTCATGAACCAGCGTGGAGCCAGGGTGTCTTCTCCCATCCTCATCATTTCCTATGAGACCTTCCGCCTT
CATGTTGGAGTCCTCCAGAAAGGAAGTGTTGGTCTGGTCATATGTGACGAGGGACACAGGCTCAAGAACT
CTGAGAATCAGACTTACCAAGCCCTGGACAGCTTGAACACCAGCCGGCGGGTGCTCATCTCCGGAACTCC
CATCCAGAATGATCTGCTTGAGTATTTCAGCTTGGTACATTTTGTTAATTCCGGCATCCTAGGGACTGCC
CATGAATTCAAGAAGCATTTTGAATTGCCAATTTTGAAGGGTCGAGACGCTGCTGCTAGTGAGGCAGACA
GGCAGCTAGGAGAGGAGCGGCTGCGGGAGCTCACCAGCATTGTGAATAGATGCCTGATACGGAGGACTTC
TGATATCCTTTCTAAATATCTGCCTGTGAAGATTGAGCAGGTCGTTTGTTGTAGGCTGACACCCCTTCAG
ACTGAGTTATACAAGAGGTTTCTGAGACAAGCCAAACCGGCAGAAGAATTGCTTGAGGGCAAGATGAGTG
TGTCTTCCCTTTCTTCCATCACCTCGCTAAAGAAGCTTTGTAATCATCCAGCTCTAATCTATGATAAGTG
TGTGGAAGAGGAGGATGGCTTTGTGGGTGCCTTGGACCTCTTCCCTCCTGGTTACAGCTCTAAGGCCCTG
GAGCCCCAGCTGTCAGGTAAGATGCTGGTCCTGGATTATATTCTGGCGGTGACCCGAAGCCGTAGCAGTG
ACAAAGTAGTGCTGGTGTCGAATTACACCCAGACTTTGGATCTCTTTGAGAAGCTGTGCCGTGCCCGAAG
GTACTTATACGTCCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTAGAACGCTTCAAT
AGTCCATCGAGCCCTGACTTTGTCTTCATGCTGAGCAGCAAAGCTGGGGGCTGTGGCCTCAATCTCATTG
GGGCTAACCGGCTGGTCATGTTTGACCCTGACTGGAACCCAGCCAATGATGAACAAGCCATGGCCCGGGT
CTGGCGAGATGGTCAAAAGAAGACTTGCTATATCTACCGCCTGCTGTCTGCAGGGACCATTGAGGAGAAG
ATCTTCCAGCGTCAGAGCCACAAGAAGGCACTGAGCAGCTGTGTGGTGGATGAGGAGCAGGATGTAGAGC
GCCACTTCTCTCTGGGCGAGTTGAAGGAGCTGTTTATCCTGGATGAAGCTAGCCTCAGTGACACACATGA
CAGGTTGCACTGCCGACGTTGTGTCAACAGCCGTCAGATCCGGCCACCCCCTGATGGTTCTGACTGCACT
TCAGACCTGGCAGGGTGGAACCACTGCACTGATAAGTGGGGGCTCCGGGATGAGGTACTCCAGGCTGCCT
GGGATGCTGCCTCCACTGCCATCACCTTCGTCTTCCACCAGCGTTCTCATGAGGAGCAGCGGGGCCTCCG
CTGA

Translation (747 aa):
MRRSLAPSQLAKRKPEGRSCDDEDWQPGLVTPRKRKSSSETQIQECFLSPFRKPLSQLTNQPPCLDSSQH
EAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEKDALVLYEPPPLSAHDQLKLDKEKLP
VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPE
IDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRL
HVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA
HEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ
TELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVGALDLFPPGYSSKAL
EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKKRAKVVERFN
SPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK
IFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDEASLSDTHDRLHCRRCVNSRQIRPPPDGSDCT
SDLAGWNHCTDKWGLRDEVLQAAWDAASTAITFVFHQRSHEEQRGLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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