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Report for CCDS24254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24254.1 Public Mus musculus 10 Rdh16f2 23 108 98 CCDS HistoryNCBI Gene:216454Re-query CCDS DB by CCDS ID:24254.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092058.3 ENSMUSP00000089691.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092058.3Link to Ensembl Protein Viewer:ENSMUSP00000089691.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092058Re-query CCDS DB by Protein ID:ENSMUSP00000089691
Original member Current member NCBI NM_145424.2 NP_663399.2 Accepted alive Link to Nucleotide Sequence:NM_145424.2Link to Protein Sequence:NP_663399.2Re-query CCDS DB by Nucleotide ID:NM_145424Re-query CCDS DB by Protein ID:NP_663399Link to BLAST:NP_663399.2

Chromosomal Locations for CCDS 24254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127866556 127866868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127874829 127875090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127876251 127876414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127876874 127877091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGTGGCTCTACATGGTGGCGCTACTGGGCCTGTGGATGCTCCTGCGCTTTTTTAGAGAGAGGCAAGTGG
TGGACCATCTTCAAGACAAGTATGTCTTCATCACAGGCTGTGGCTCTGGCTTTGGGAACCTGCTGGCCAG
ACAGCTGGACAGGAGAGGCATGAGAGTGTTGGCTGCATGTCGGAAGGAGGAGGGAGCCGAGGAGCTGAGG
AGAAAGACATCAGAAAGGCTGGAGACAGTGATCCTGGATGTCACCAAGACAGAGAATATTGTGGCAGCCA
CTCAGTGGGTGAAGGAGCGTGTTGGGAACAGAGGACTCTGGGGCCTGGTCAACAACGCTGGCATCTCCGT
CCCCTCGGGTCCCAACGAGTGGATGAAAAAACAGGACTTTGCAAGTGTACTGGATGTGAACCTGTTGGGC
TTGATCGAGGTGACTCTGAGCATGCTGCCCTTAGTGAGGAAGGCGAGGGGCCGTGTGGTCAACGTCTCCA
GCATCTTGGGCAGAGTGTCACTTGGTGGTAGTGGTGGTTACTGCATCTCCAAGTATGGTATAGAGGCCTT
CTCAGACTCCCTTAGGAGGGAGCTCCGCTACTTTGGGGTGAAGGTGGCTATTATAGAGCCTGGCTTCTTC
CTGACTGGTATGGCCAGTAGTGCCAGATTATGCTCAAATATCCAGATGCTGTGGGACCAGACCAGCTCAG
AAATCAGGGAGATCTATGGAGAGAAATACCTGGCATCCTATCTGAAAAACCTAAACGAATTGGACCAGAG
GTGCAACAAGGACCTGTCTGTGGTGACTGACTGCATGGAGCACGCTCTGACTGCCTGTCACCCTCGCACG
AGATACTCAGCTGGCTGGGATGCTAAGCTCTTCTTCACCCCCTTGAGCTACCTGCCCACCTTTCTTGTGG
ATGCTCTTCTATACTGGACTTCTCCAAAACCTGACAAAGCCCTGTGA

Translation (318 aa):
MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAACRKEEGAEELR
RKTSERLETVILDVTKTENIVAATQWVKERVGNRGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVNLLG
LIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCISKYGIEAFSDSLRRELRYFGVKVAIIEPGFF
LTGMASSARLCSNIQMLWDQTSSEIREIYGEKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRT
RYSAGWDAKLFFTPLSYLPTFLVDALLYWTSPKPDKAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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