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Report for CCDS36026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36026.1 Public Mus musculus 10 Slc5a8 23 108 98 CCDS HistoryNCBI Gene:216225Re-query CCDS DB by CCDS ID:36026.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36026.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020255.7 ENSMUSP00000020255.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020255.7Link to Ensembl Protein Viewer:ENSMUSP00000020255.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020255Re-query CCDS DB by Protein ID:ENSMUSP00000020255
Original member Current member NCBI NM_145423.2 NP_663398.2 Accepted alive Link to Nucleotide Sequence:NM_145423.2Link to Protein Sequence:NP_663398.2Re-query CCDS DB by Nucleotide ID:NM_145423Re-query CCDS DB by Protein ID:NP_663398Link to BLAST:NP_663398.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663398.2 611 Q8BYF6 611 100% 0 0

Chromosomal Locations for CCDS 36026.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88886307 88886657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88892024 88892089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88894318 88894369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88901390 88901457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88902414 88902568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88904917 88905057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88906277 88906406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88907967 88908055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88909584 88909696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88911352 88911419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88918372 88918458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88919353 88919558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88921676 88921779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88925706 88925785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88926210 88926335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGACGCGTCGCGGGACATCGGCAGTTTTGTGGTGTGGGACTACGTGGTGTTCGCAGGCATGCTGCTCA
TCTCGGCGGCTATAGGCATCTATTACGCCTTCGCGGGGGGCGGCCAGCAGACCTCCAAGGACTTTCTTAT
GGGCGGTCGCAGTATGTCCGCCGTGCCTGTGGCTCTGTCCCTCACCGCCAGCTTCATGTCCGCTGTCACT
GTCCTGGGCACTCCTGCCGAGGTCTACCGTTTTGGGGCGATATTCAGCATCTTTGTCATCACCTACTTTT
TTGTAGTGGTTATCAGCGCGGAGGTCTTCCTTCCAGTGTTCTATAGGCTGGGGATCACCAGCACCTACGA
GTATTTGGAACTTCGATTTAATCGATGCATTCGTCTCTGTGGCACAATCCTCTTCATCGTTCAAACAATT
CTGTACACTGGAATTGTGATTTATGCCCCTGCTCTGGCTTTGAATCAAGTTACAGGATTTGATCTGTGGG
GCGCAGTGGTGGCCACAGGGGTGGTCTGCACATTCTACTGCACACTGGGCGGTCTTAAAGCAGTTGTCTG
GACAGATGTTTTTCAAGTTGGGATCATGGTGGCTGGATTTGCATCCGTAATTATACAGGCATCAATAACT
CAACATGGCATCAATAAGATTTTAAGTGATGCTTTTAATGGTGGAAGATTAAACTTCTGGAATTTTGATC
CTAACCCTTTGCAAAGACACACGTTCTGGACAATTGTCATTGGAGGGACTTTTACCTGGACCACCATCTA
TGGTGTCAACCAGTCCCAAGTGCAGAGATATATTTCCTGTAAAAGCAGACTCCATGCAAAACTGTCCCTC
TATGTCAACCTTGTGGGCCTCTGGGTGATCCTCACCTGCTCCATATTCTGTGGGCTTGCCCTGTACTCCA
GATACCGTGAATGTGATCCCTGGACATCTAAGAAAGTGTCAGCGATTGACCAGCTTATGCCTTATTTGGT
GTTGGACATTTTGAAAAATTACCCTGGTGTTCCCGGACTTTTTGTGGCCTGCGCTTACAGTGGGACATTA
AGCACAGTGTCCTCCAGTATCAATGCCTTGGCGGCAGTCACCGTGGAAGATCTCATCAAACCCCGCTTTA
AGTCTCTCTCAGAGAAGTCTCTGTCTTGGATTTCCCAAGGAATGAGTGTTCTGTATGGAGCTCTGTGCAT
TGGAATGGCTGCCCTGGCATCGCTGATGGGAGCCTTGTTACAGGCAGCACTCAGCATATTCGGCATGGTT
GGTGGACCACTTCTGGGCTTGTTTTCTTTGGGCATCTTGGTCCCCTTCGCCAACTCGATTGGAGCACTCA
CTGGTCTGTTGGCTGGATTTGCCATTTCCTTATGGGTAGGAATTGGAGCCCAGCTTTATCCTCCGCTTCC
TGAGAGAACCTTACCATTGCCCCTTGAAACCTATGGCTGTAACATCACGCACAATGGGTCGGACTGGATG
TCAACCACAGAAATGCCATTTTCTACTAGCGCTTTTCAAATACATAATGCGGAAAGGACTCCACTGATGG
ACAATTGGTATTCATTATCATATCTGTACTTCAGTACTATTGGAACGCTGACAACACTGTTTGTGGGGAT
ACTTATCAGCTTATCAACAGGAGGAAGAAAACAGAACTTAGATCCCCGATTCTTACTAACCAAACAGGAC
TTTTTATCCAATTTTGATGTTTTTAAGAAAAGGAATCATGTTTTAAACTATAAATTGCATCCTGTGGAAG
TTGGTGGAACTGATAACCCTGCCTTCAACCATGTTGAGCTGAACTTCACAGATCACAGTGGCAAGATCAA
TGGGACTCGCTTGTGA

Translation (611 aa):
MDASRDIGSFVVWDYVVFAGMLLISAAIGIYYAFAGGGQQTSKDFLMGGRSMSAVPVALSLTASFMSAVT
VLGTPAEVYRFGAIFSIFVITYFFVVVISAEVFLPVFYRLGITSTYEYLELRFNRCIRLCGTILFIVQTI
LYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVVWTDVFQVGIMVAGFASVIIQASIT
QHGINKILSDAFNGGRLNFWNFDPNPLQRHTFWTIVIGGTFTWTTIYGVNQSQVQRYISCKSRLHAKLSL
YVNLVGLWVILTCSIFCGLALYSRYRECDPWTSKKVSAIDQLMPYLVLDILKNYPGVPGLFVACAYSGTL
STVSSSINALAAVTVEDLIKPRFKSLSEKSLSWISQGMSVLYGALCIGMAALASLMGALLQAALSIFGMV
GGPLLGLFSLGILVPFANSIGALTGLLAGFAISLWVGIGAQLYPPLPERTLPLPLETYGCNITHNGSDWM
STTEMPFSTSAFQIHNAERTPLMDNWYSLSYLYFSTIGTLTTLFVGILISLSTGGRKQNLDPRFLLTKQD
FLSNFDVFKKRNHVLNYKLHPVEVGGTDNPAFNHVELNFTDHSGKINGTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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