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Report for CCDS16693.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16693.2 Public Mus musculus 2 Ncaph 23 108 98 CCDS HistoryNCBI Gene:215387Re-query CCDS DB by CCDS ID:16693.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 16693.2
The coding region has been updated to extend the N-terminus. The alternative upstream start codon is well-conserved and is used by homologs. The update changes the protein length from 723 aa to 731 aa, but the splice sites are unaffected.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 16693.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110387.3 ENSMUSP00000106017.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110387.3Link to Ensembl Protein Viewer:ENSMUSP00000106017.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110387Re-query CCDS DB by Protein ID:ENSMUSP00000106017
Original member NCBI NM_144818.3 NP_659067.2 Updated not alive Link to Nucleotide Sequence:NM_144818.3Link to Protein Sequence:NP_659067.2Re-query CCDS DB by Nucleotide ID:NM_144818Re-query CCDS DB by Protein ID:NP_659067
Current member NCBI NM_144818.4 NP_659067.2 Accepted alive Link to Nucleotide Sequence:NM_144818.4Link to Protein Sequence:NP_659067.2Re-query CCDS DB by Nucleotide ID:NM_144818Re-query CCDS DB by Protein ID:NP_659067Link to BLAST:NP_659067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659067.2 731 Q8C156 731 100% 0 0

Chromosomal Locations for CCDS 16693.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127104221 127104280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127105846 127105921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127106104 127106195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127107354 127107470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127108485 127108658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127113560 127113670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127116532 127116654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127117506 127117612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127118077 127118225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127121125 127121327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127122040 127122131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127123537 127123726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127124831 127124955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127125551 127125686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127126115 127126207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127127104 127127194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127127485 127127722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127133849 127133867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2196 nt):
ATGAGAATTCCGCGCTCAGAAACAATGAATAGCTCTTTTCTGAAGGCCCGAGGACAACAGGATGTTCTTT
CCTCACCTTTGGAACGGGTGCCCCCAGCATCCCGGCCCGGGAAGGCTCCACTTGGCACTCCTAAAACCCC
AGTCCTCGAAGACTTTCCTCAGAATGACGATGAAAAGGAGCGGATGCAGCGGAGACGCTCCAGGGTCTTT
GACCTGCAGTTCAGTACAGATTCGATTCATCTGGCCTCCCCTAACAGGAATATTGATGTTTCAACTACCA
TATCTAAGTTTACAAACACACAGATTACAGAACATTACTCTACCTGTATCAAGCTTTCTTCTGAAAATAA
AATCACTACTAAGAATGCTTTCGGCTTGCATTTGATTGATTTCATGTCAGAGATTCTGAAGCAGAAAGAT
GCAGAACCAACCAACTTTAAAGTGGCTGCTGGCACCTTGGATGCCAGCACCAAGATCTATGCTGTCCGTG
TGGATGCCGTCCATGCTGATGTATACAGAGTCCTTGGGGGGCTGGGCAAAGACACACCACCTCAAGGAGA
GGAGAGCCACAGTGGAGATGGAAGTACCCTTGAAACAGAAAGGACTAAAAAACCTGCAAAGCCAAAGAAG
AAGCAGTCCTGCAAAACCATTGAACAGAATCTCAGCAATATCAATGTCTCGGAAGCCGATGGGAAGTGTG
CGGTGGATCCTATGTTTCAGAAGACAGCAGCCTCCTTTGATGAATGCAGCACGACTGGGGTATTTCTCTC
CACGCTGCACTGCCAGGACTACAGAAGCGAGCTGCTCTTTCCTTCCGACATGCAGACCCTCTCCTCAGGA
GAGCCCCTCGAGCTGCCGGATCTGGGTTTCGTAGACATGACAGATTTAGAAGCTTCCTTGCAGCAGTGTG
TGGAAGACCGCCCGCTCTGCCCATCCCTGGCCGGGTTCCAGTTTACTAAATGGGACAGCGAAACACATAA
TGAGTCTGTGTCGGCCCTGGTGGACAAGTTTAAGAAGAATGATCAAGTATTTGACATCAATGCTGAGGCT
GAAGACGATGAAGAGGATGTCCCTGATGGGCCCCTGGTGGAGGATTTTGTTGACAATGATGAGCCAGACC
TTTCTGCAGCTGGGGACCATGAAGAGTTCCGGAGCTGGAAGGAGCTCTGTCAGGTCCAGAGCAACCAGGA
AGAAGTTATTTCCCTCGAGGACAGAGACATCCAAGTCATGTGCTCCTTTTTATCCATGAAACCTGGGGAA
TATTCCTATTTCAGTCCCCGGACCATGAAGATGTGGGCTGGCCCAGATCACTGGCGCTTCAGGCCTCGAC
CCAAGCAAGATGCTACCTCCTGCACAGAGCACAAAAAGAAGAGTGCAAAGAAAGACTTTGAAATTAATTT
TGATGATGATATTGATTTTGATGCATATTTTCAGAAAACAAAGGCTGCTACCATTCTGACCAAGTCCACT
TTGGAGAACCAGAATTGGAAAGCCACCACTCTTCCCACAGATTTCCACTATGAAACTGATAATCTGATCC
AGCTTCACCTCAAACCAGGCAAAAGGTCACTTAAGATGGACCAGGACCAGAAGGCTAAGACTGAGCACTA
TGAGGAAATTGAAGACTATGATTACAACAACCCTAACGACACCTCCAACTATTGTCCTGGACTTCAGGCT
GCTGACAGTGATTATGAAGAGGCAGACGATTTATTTGCGGATCCAGTCGGGACCCTTGACCTTGAGTCTG
ATCCAAAGACAACACAAGAGAATGGTCACATTTCTCCTGAAAACCAAGGAGTAGATATCACAACTTACCA
AGAGTTGAACTTGGTGGCTGAGCCTCAAAAGGTGAATAAAATAGAAATTCATTACGCCAAGACTGCCAAA
AAGATGGACATGAAGAAGCTGAAGCAGAGTATGTGGAGTCTGCTGACGAAGTTTTCTAGGAAGGAGGCTG
ACACAGAGGCAAACCACACTGAAAGTGGACAGGAAGGTGCCCCCGAGGAAGTGGCTGATGAGAAGAAACT
CAGTGGGCTCACAAAGGACCTGCAGACAAGGCTGCCCCCGCTCATGGCTCAGAACCTCTCCATACCCCTG
GCTTTTGCCTGTCTTCTGCACTTAGCAAATGAAAAGAATCTGAAGCTAGAAGGCACAGAGGATCTTTCTG
ATGTTCTGGTGATGCAAGGGGACTGA

Translation (731 aa):
MRIPRSETMNSSFLKARGQQDVLSSPLERVPPASRPGKAPLGTPKTPVLEDFPQNDDEKERMQRRRSRVF
DLQFSTDSIHLASPNRNIDVSTTISKFTNTQITEHYSTCIKLSSENKITTKNAFGLHLIDFMSEILKQKD
AEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDTPPQGEESHSGDGSTLETERTKKPAKPKK
KQSCKTIEQNLSNINVSEADGKCAVDPMFQKTAASFDECSTTGVFLSTLHCQDYRSELLFPSDMQTLSSG
EPLELPDLGFVDMTDLEASLQQCVEDRPLCPSLAGFQFTKWDSETHNESVSALVDKFKKNDQVFDINAEA
EDDEEDVPDGPLVEDFVDNDEPDLSAAGDHEEFRSWKELCQVQSNQEEVISLEDRDIQVMCSFLSMKPGE
YSYFSPRTMKMWAGPDHWRFRPRPKQDATSCTEHKKKSAKKDFEINFDDDIDFDAYFQKTKAATILTKST
LENQNWKATTLPTDFHYETDNLIQLHLKPGKRSLKMDQDQKAKTEHYEEIEDYDYNNPNDTSNYCPGLQA
ADSDYEEADDLFADPVGTLDLESDPKTTQENGHISPENQGVDITTYQELNLVAEPQKVNKIEIHYAKTAK
KMDMKKLKQSMWSLLTKFSRKEADTEANHTESGQEGAPEEVADEKKLSGLTKDLQTRLPPLMAQNLSIPL
AFACLLHLANEKNLKLEGTEDLSDVLVMQGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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