NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23300.1 Public Mus musculus 9 Csnk1g1 23 108 98 CCDS HistoryNCBI Gene:214897Re-query CCDS DB by CCDS ID:23300.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23300.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034949.9 ENSMUSP00000034949.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034949.9Link to Ensembl Protein Viewer:ENSMUSP00000034949.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034949Re-query CCDS DB by Protein ID:ENSMUSP00000034949
Original member Current member EBI ENSMUST00000206594.1 ENSMUSP00000145947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206594.1Link to Ensembl Protein Viewer:ENSMUSP00000145947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206594Re-query CCDS DB by Protein ID:ENSMUSP00000145947
Original member NCBI NM_173185.2 NP_775277.2 Updated not alive Link to Nucleotide Sequence:NM_173185.2Link to Protein Sequence:NP_775277.2Re-query CCDS DB by Nucleotide ID:NM_173185Re-query CCDS DB by Protein ID:NP_775277
Current member NCBI NM_173185.3 NP_775277.2 Accepted alive Link to Nucleotide Sequence:NM_173185.3Link to Protein Sequence:NP_775277.2Re-query CCDS DB by Nucleotide ID:NM_173185Re-query CCDS DB by Protein ID:NP_775277Link to BLAST:NP_775277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775277.2 459 Q8BTH8 459 100% 0 0

Chromosomal Locations for CCDS 23300.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 65958541 65958721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65973479 65973519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65980903 65980972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 65999395 65999546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66002047 66002281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66007740 66007825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66010063 66010147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66010422 66010570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66012747 66012854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66019802 66019912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66032239 66032345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66039577 66039631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGACCATTCTAATAGGGAAAAGGATGATAGACAACGGACAACTAAAACCATGGCACAAAGGAATACAC
ACTGTTCGAGACCATCTGGCACTTCAACATCCTCTGGGGTTCTCATGGTGGGACCCAACTTCAGGGTTGG
CAAGAAGATAGGGTGTGGGAACTTCGGAGAGCTCAGATTAGGTAAAAATCTCTACACCAATGAATATGTA
GCCATTAAACTGGAACCAATAAAATCACGTGCTCCACAACTTCATTTAGAGTACAGGTTTTATAAACAGC
TTGGCAGTGCAGGTGAAGGCCTCCCACAGGTTTATTACTTTGGACCATGTGGGAAGTACAATGCCATGGT
GCTGGAACTCCTTGGCCCTAGCTTGGAAGACTTGTTTGACCTCTGTGACCGAACGTTTACTTTGAAGACG
GTGTTAATGATAGCCATCCAGTTGCTTTCTCGAATGGAGTATGTACACTCAAAGAATCTTATTTACCGAG
ATGTCAAACCAGAGAACTTCTTGATTGGCCGACAAGGCAATAAGAAAGAGCATGTAATACACATTATAGA
TTTTGGACTGGCCAAGGAATATGTTGATCCTGAAACCAAAAAACACATACCTTACAGAGAGCACAAAAGT
TTGACTGGAACTGCGAGATACATGTCTATCAACACACATCTAGGCAAAGAGCAAAGCCGGCGAGATGATT
TGGAAGCCTTAGGCCATATGTTCATGTACTTCCTCCGAGGCAGCCTACCCTGGCAAGGACTCAAGGCTGA
TACATTAAAAGAGAGATATCAAAAAATCGGTGATACCAAAAGGAATACTCCCATCGAAGCTCTCTGTGAG
AACTTTCCAGAGGAGATGGCAACCTACCTTCGATATGTCAGGCGATTAGACTTCTTTGAAAAACCTGATT
ATGAGTATTTACGGACCCTCTTCACAGATCTGTTTGAACGGAAAGGCTATACCTTTGACTATGCCTATGA
TTGGGTTGGAAGGCCTATTCCTACTCCAGTAGGATCAGTTCATGTAGATTCTGGTGCATCTGCAATAACT
CGAGAAAGCCACACACACAGGGATCGGCCATCACAACAACAGCCTCTTAGAAATCAGACTACATCATCAG
AGCGCCGAGGAGAGTGGGAAATCCAGCCCAGCCGGCAGACCAATACCTCATACCTGACGTCTCACTTGGC
CGCAGACCGCCATGGGGGTTCAGTACAGGTGGTTAGCTCAACCAATGGAGAGCTGAATGTCGATGACCCC
ACTGGAGCTCACTCCAATGCACCAATCACAGCTCATGCCGAAGTGGAGGTAGTGGAGGAAGCTAAGTGCT
GCTGTTTCTTTAAGAGGAAAAGGAAGAAGACAGCCCAGCGACACAAGTGA

Translation (459 aa):
MDHSNREKDDRQRTTKTMAQRNTHCSRPSGTSTSSGVLMVGPNFRVGKKIGCGNFGELRLGKNLYTNEYV
AIKLEPIKSRAPQLHLEYRFYKQLGSAGEGLPQVYYFGPCGKYNAMVLELLGPSLEDLFDLCDRTFTLKT
VLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHVIHIIDFGLAKEYVDPETKKHIPYREHKS
LTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRNTPIEALCE
NFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKGYTFDYAYDWVGRPIPTPVGSVHVDSGASAIT
RESHTHRDRPSQQQPLRNQTTSSERRGEWEIQPSRQTNTSYLTSHLAADRHGGSVQVVSSTNGELNVDDP
TGAHSNAPITAHAEVEVVEEAKCCCFFKRKRKKTAQRHK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH