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Report for CCDS38569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38569.1 Public Mus musculus 3 Csde1 23 108 98 CCDS HistoryNCBI Gene:229663Re-query CCDS DB by CCDS ID:38569.1Re-query CCDS DB by GeneID:229663See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38569.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029446.12 ENSMUSP00000029446.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029446.12Link to Ensembl Protein Viewer:ENSMUSP00000029446.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029446Re-query CCDS DB by Protein ID:ENSMUSP00000029446
Original member Current member EBI ENSMUST00000197827.4 ENSMUSP00000143503.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197827.4Link to Ensembl Protein Viewer:ENSMUSP00000143503.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197827Re-query CCDS DB by Protein ID:ENSMUSP00000143503
Original member Current member NCBI NM_144901.4 NP_659150.1 Accepted alive Link to Nucleotide Sequence:NM_144901.4Link to Protein Sequence:NP_659150.1Re-query CCDS DB by Nucleotide ID:NM_144901Re-query CCDS DB by Protein ID:NP_659150Link to BLAST:NP_659150.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659150.1 798 Q91W50 798 100% 0 0

Chromosomal Locations for CCDS 38569.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103038692 103038890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103039933 103040042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103040441 103040533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103041145 103041242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043157 103043238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043557 103043685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103043806 103043931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103044629 103044841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103046785 103046925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103047014 103047178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103049621 103049728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103050298 103050473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103051040 103051152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103052812 103052931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103054655 103054833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103055349 103055512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103056345 103056477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103056886 103056933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACACAATGGGTACCCCAATGGTACTTCAGCAGCAC
TTCGTGAAACTGGGGTTATTGAAAAACTCTTGACCTCTTACGGATTCATTCAGTGTTCAGAACGGCAAGC
TAGACTTTTCTTCCACTGTTCACAATATAATGGCAACCTCCAAGACTTAAAAGTAGGAGATGATGTTGAA
TTTGAAGTATCATCTGACCGGAGGACTGGGAAACCTATTGCTATTAAATTGGTGAAGATAAAACCAGAAA
TACATCCTGAAGAACGAATGAACGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCC
AGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGAAGTATTTTATCTGACT
TACACCTCTGAAGATGTGGAAGGGAATGTTCAGCTGGAAACTGGAGATAAAATTAACTTTGTAATTGATA
ACAATAAACACACTGGTGCTGTAAGTGCTCGTAATATTATGCTGTTGAAAAAGAAGCAGGCTCGCTGTCA
AGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCTTTATCGAAAGAGGTGATGTTGTAAAAGAGATATTC
TTTCACTATAGTGAATTTAAAGGTGACCTAGAAACCCTACAGCCTGGAGATGACGTGGAATTCACAATCA
AGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACTATTGCCTCAAGGAACAGTCATTTTTGAAGA
TATCAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAAT
GACCCATTGCCAGGACGAATCAAAGTTGACTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGACA
CAAAATCCAAAGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGACGTGACAA
ATTGGAACGAGCAACCAACATAGAGGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAGATG
GGTGTGATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTTCT
TCCACTTCAGTGAGATTCTAGATGGGAACCAGCTCCACATTGCAGATGAAGTAGAGTTTACTGTGGTTCC
TGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAACTTCCCAAGGGCACGGTTTCATTC
CATTCCCATTCAGATCATCGTTTTCTGGGCACCGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACTA
CAAGCCCAAATAAAGGCAAAGACAAGGAGGCAGAAGATGGCATTATAGCTTATGACGACTGTGGGGTGAA
ACTGACGATTGCTTTTCAAGCCAAGGATGTGGAAGGATCTACTTCTCCTCAAATAGGAGATAAGGTTGAA
TTTAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTGCAACTTGCGTGAGACTTTTAGGTCGTAATT
CTAACTCCAAACGTCTCTTGGGTTATGTGGCAACTCTGAAAGATAATTTTGGATTTATAGAAACAGCTAA
TCATGATAAGGAAATATTTTTCCACTATAGTGAGTTCTCTGGTGATGTTGATAGCCTGGAACTGGGAGAC
ATGGTTGAATACAGCTTGTCCAAAGGCAAAGGCAATAAAGTCAGTGCTGAGAAAGTAAACAAAGCCCACT
CAGTGAATGGCATTACTGAGGAAGCTAATCCCACCATCTACTCTGGTAAAGTCATTCGCCCTCTGAGAGG
TGTTGATCCAACACAGATTGAGTACCAAGGAATGATTGAGATTGTGGAGGAGGGGGATATGAAAGGTGAA
GTGTATCCTTTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAGAGTGTCAAGT
TCCAGTTGTGTGTACTTGGCCAAAATGCACAAACTATGGCCTACAACATCACACCCCTTCGTAGGGCTAC
TGTGGAGTGTGTGAAAGATCAGTTTGGCTTTATTAACTATGAAGTAGGAGATAGCAAGAAGCTCTTTTTC
CATGTGAAAGAAGTTCAGGATGGCGTTGAGCTACAGGCAGGAGATGAGGTGGAATTCTCAGTGATCCTTA
ATCAGCGCACTGGGAAGTGCAGTGCCTGTAATGTCTGGCGAGTCTGTGAAGGCCCCAAAGCTGTTGCAGC
TCCTCGACCTGACCGGTTGGTCAATCGCCTAAAGAACATCACCCTGGATGATGCCAGTGCTCCACGTCTA
ATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAG
CTGGTGTCATTGACTAA

Translation (798 aa):
MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVE
FEVSSDRRTGKPIAIKLVKIKPEIHPEERMNGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLT
YTSEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF
FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQN
DPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREM
GVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSF
HSHSDHRFLGTVEKEATFSNPKTTSPNKGKDKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVE
FSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGD
MVEYSLSKGKGNKVSAEKVNKAHSVNGITEEANPTIYSGKVIRPLRGVDPTQIEYQGMIEIVEEGDMKGE
VYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFF
HVKEVQDGVELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRL
MVLRQPRGPDNSMGFGAERKIRQAGVID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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