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Report for CCDS24669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24669.1 Public Mus musculus 11 Skp1 23 108 98 CCDS HistoryNCBI Gene:21402Re-query CCDS DB by CCDS ID:24669.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037324.11 ENSMUSP00000038744.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037324.11Link to Ensembl Protein Viewer:ENSMUSP00000038744.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037324Re-query CCDS DB by Protein ID:ENSMUSP00000038744
Original member Current member EBI ENSMUST00000109072.1 ENSMUSP00000104700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109072.1Link to Ensembl Protein Viewer:ENSMUSP00000104700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109072Re-query CCDS DB by Protein ID:ENSMUSP00000104700
Original member Current member NCBI NM_011543.4 NP_035673.3 Accepted alive Link to Nucleotide Sequence:NM_011543.4Link to Protein Sequence:NP_035673.3Re-query CCDS DB by Nucleotide ID:NM_011543Re-query CCDS DB by Protein ID:NP_035673Link to BLAST:NP_035673.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035673.3 163 Q9WTX5 163 100% 0 0

Chromosomal Locations for CCDS 24669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 52236837 52236933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52242587 52242660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52243615 52243758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52244981 52245121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 52245985 52246020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGCCTACGATAAAGTTGCAGAGTTCTGATGGAGAGATATTTGAAGTTGATGTAGAAATTGCCAAACAAT
CTGTGACTATCAAGACCATGCTGGAAGATTTGGGAATGGATGATGAAGGAGATGATGATCCTGTTCCTTT
ACCAAATGTTAATGCAGCAATTCTAAAGAAGGTCATTCAGTGGTGCACCCACCACAAAGATGACCCTCCT
CCTCCTGAGGATGATGAAAACAAAGAAAAGCGGACAGATGATATTCCTGTTTGGGACCAAGAATTCCTGA
AAGTTGACCAAGGAACACTTTTTGAACTTATTCTGGCTGCAAACTACTTAGACATCAAAGGTTTGCTTGA
TGTCACATGCAAGACTGTGGCCAATATGATTAAGGGGAAAACTCCTGAGGAGATTCGTAAAACCTTCAAT
ATCAAAAATGACTTTACTGAAGAGGAAGAGGCCCAGGTACGCAAAGAGAACCAATGGTGTGAAGAGAAGT
GA

Translation (163 aa):
MPTIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP
PPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN
IKNDFTEEEEAQVRKENQWCEEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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